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Tayebe Ranjbarnejad

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Latest activity by Tayebe Ranjbarnejad
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    Tayebe Ranjbarnejad commented,

    1. Tool Index
    2. 4.1.7.0
    3. HaplotypeCaller

    Hi  I ran the following command to generate the GVCF file, but the size of the generated files was rather high (~ 18 GB). In comparison, the VCF file that I got without the ERC option was about 400...

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    • Tayebe Ranjbarnejad
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    Tayebe Ranjbarnejad created a post,

    incomplete or partial VCF file

    1. Community
    2. General Discussion

    Hello all, I am trying to call germline variants using gatk-4.3.0.0 HaplotypeCaller and Bcftools from one sorted bam file. The generated vcf file of HaplotypeCaller and Bcftools has only variants o...

    • Tayebe Ranjbarnejad
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