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Tomás Rodríguez

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Latest activity by Tomás Rodríguez
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    Tomás Rodríguez commented,

    1. Community
    2. General Discussion
    3. GenomicsDBImport doesn't work with >2 samples

    Hi Genevieve, Thanks again for your replies. Unfortunately, my job could not complete after 36 hours. I'm new to using GATK and am getting the sense that I'm not using the workflow for its intended...

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    • Tomás Rodríguez
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    Tomás Rodríguez commented,

    1. Community
    2. General Discussion
    3. GenomicsDBImport doesn't work with >2 samples

    Thank you for your quick reply! Embarrassingly, this was this issue. Apologies for that! I specified the correct sample names and intervals according to the support page you linked. Unfortunately, ...

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    • Tomás Rodríguez
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    Tomás Rodríguez created a post,

    GenomicsDBImport doesn't work with >2 samples

    Answered
    1. Community
    2. General Discussion

    [gatk_4.1.8.1]I am working with 8 GVCF files generated with HaplotypeCaller and indexed using bcftools. ValidateVariants runs without issue.   The below command prompts a "Failed to create reader f...

    • Tomás Rodríguez
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