General Discussion
-
GATK pathseq reference database availability0 votes 1 comment
-
Can DRAGEN-GATK be applied to DNBSEQ?0 votes 1 comment
-
variant calling on scRNAseq0 votes 1 comment
-
ukb - Merging Y chromosome VCF file having different number of samples0 votes 2 comments
-
Question on using GATK-DRAGEN (dragmap-os aligner) with Mutect20 votes 1 comment
-
Minimum median mapping quality output query0 votes 3 comments
-
Empty, meaningless HaploytypeCaller output0 votes 1 comment
-
Need help with converting VCF to SEG file for CNV visualization Answered0 votes 3 comments
-
GATK pathseq - viladation BLASTN0 votes 2 comments
-
VQSR first step do not generate plots0 votes 1 comment
-
Gene coverage issue in GATK 4.3.0.0 using GRCh380 votes 2 comments
-
java.lang.NullPointerException with GenotypeGVCFs on pooled samples0 votes 1 comment
-
Gene annonation from aligned genome with reference0 votes 0 comments
-
Extract reads from BAM file that contain specific variant0 votes 0 comments
-
Error in LiftOverIntervalList0 votes 0 comments
-
base recalibration0 votes 0 comments
-
Question about how to run CrossCheckFingerPrints (Haplotype map)0 votes 1 comment
-
--max-events-in-region in FilterMutectCalls0 votes 0 comments
-
Pipeline for calling human haloplex fastq's with GATK0 votes 0 comments
-
What is RMSMappingQuality formula0 votes 0 comments
-
No output table for BaseRecalibrator0 votes 0 comments
-
What are the plans for Funcotator?0 votes 2 comments
-
How do I speed up SelectVariants and CountVariants?0 votes 3 comments
-
GenomicsDBImport-Syntax error in JSON file0 votes 5 comments
-
Using 1 available threads, but 32 were requested [Mutect2]0 votes 0 comments
-
Is it necessory to mention disable-read-filter in Mutect2 somatic calling?0 votes 0 comments