General Discussion
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GenomicsDBImport ended without results0 votes 3 comments
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Mutect2 tumor-only mode without normal match or germline resources0 votes 1 comment
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Picard issue0 votes 5 comments
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Lanes from same sample show very discordant called variant results.0 votes 13 comments
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Negative number in the output file of CompareSAMs0 votes 3 comments
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GATK GRCh38 Reference0 votes 1 comment
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Picard MarkDuplicates Failing0 votes 5 comments
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Picard MarkDuplicates error0 votes 1 comment
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GenotypeGVCFs strategy0 votes 1 comment
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Robustness of gCNV to difference in sequencing depth for reference cohort0 votes 2 comments
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gatk MarkDuplicatesSpark error0 votes 1 comment
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Error in MergeBAMAlignment0 votes 18 comments
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GATK 4.6.10 votes 2 comments
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Overlapping reads, how do we counter them while variant calling?1 vote 1 comment
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htsjdk.tribble.TribbleException: partial missing values for GL field0 votes 3 comments
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VariantRecalibatror resources0 votes 1 comment
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Joint calling with Mutect2 with mitochondria mode0 votes 9 comments
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GenomicsDBImport error: the field AF has 1 elements; expected 20 votes 7 comments
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GATK GetPileupSummary output empty0 votes 7 comments
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How to create .fai and .dict files?0 votes 1 comment
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CollectReadCount outputs a lexicographic chromosome sort0 votes 2 comments
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FilterMutectCalls Troubleshooting, null pointer error0 votes 1 comment
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Can I change the behavior on GATK 4.6.0.0 on change GQ0 hom-refs to no-calls0 votes 6 comments
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Bam almost double after ApplyBQSR and compression-level=60 votes 2 comments
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Delete my account0 votes 3 comments