General Discussion
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Do GATK tools support Apple silicon?0 votes 0 comments
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How to restore an interrupted execution while running HaplotypeCaller0 votes 0 comments
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test0 votes 0 comments
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GetPileupSummaries error0 votes 3 comments
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expected variants not in active region by haplotypeCaller0 votes 1 comment
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mergeBamAlignment error: inappropriate call if not paired read0 votes 2 comments
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Illegal character in hostname at index 9 Answered0 votes 1 comment
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gatk legacy bundles (where to get dbsnp_138.hg19.vcf.gz)0 votes 1 comment
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incomplete or partial VCF file0 votes 1 comment
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GenomicsDBImport doesn't work with >2 samples Answered0 votes 6 comments
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hey I'm new here0 votes 0 comments
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Is it possible to use VQSR for WES data of family lineage？0 votes 1 comment
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What is the difference between the segmented vcf file and .call.seg file0 votes 1 comment
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Mutect2 somatic call error0 votes 9 comments
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multiple errors and warnings with GenotypeGVCFs Answered0 votes 5 comments
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Cannot parallelize GATK0 votes 4 comments
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Mutect2 set variant filter in command line0 votes 1 comment
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Remove Duplicate Samples from GenomeDB0 votes 1 comment
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BaseRecalibrator error0 votes 0 comments
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Haplotypecaller produce incomplete .vcf (no error), call variant for 11 out of 39 chromosomes Answered0 votes 3 comments
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CNVCaller Quality threshold0 votes 1 comment
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ApplyVQSR output restriction Answered0 votes 1 comment
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CombineGVCFs using multiple parallel jobs0 votes 1 comment
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GenotypeGVCFs doesn't work0 votes 0 comments
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HaplotypeCaller fails at regions of high depth0 votes 8 comments