General Discussion
Show all
Sort by newest post
-
gatk-test-data on AWS S30 votes 0 comments
-
Mutect2 AD counts for RNA-seq0 votes 1 comment
-
Mutect2 for Pool-seq ?0 votes 1 comment
-
RevertSam in BamRealigner: Failed to write bam0 votes 4 comments
-
Is there a max value for Picard CollectHsMetrics MEDIAN_TARGET_COVERAGE?0 votes 3 comments
-
Recalibrated output (BQSR)0 votes 3 comments
-
identify heteroplasmic variants MTLowHeteroplasmyFilterTool0 votes 1 comment
-
Where do I find the hg19 reference data for Variant Recalibration?0 votes 1 comment
-
VariantEval IndexOutOfBoundsException0 votes 6 comments
-
HaplotypeCaller Question (related to force-call-filtered-alleles)0 votes 0 comments
-
Where do I find a b37/hg19 WGS interval_list? Answered0 votes 2 comments
-
ERROR: A BAM/CRAM ERROR has occurred (version 3.6-0-g89b7209) Answered0 votes 1 comment
-
Tumor and Normal Read Frequency vs. "tumor_f" value in .MAF0 votes 1 comment
-
Suitability of GermlineCNVCaller for targeted sequening dataset0 votes 1 comment
-
How can I get everything of GATK3.8？ Answered0 votes 1 comment
-
run GenerateHaploidCNVGenotypes without population information0 votes 3 comments
-
Error in document0 votes 2 comments
-
Variant calling/ genotyping with a chromosome-scale genome assembly0 votes 1 comment
-
[HaplotypeCaller] Seeing only 1 thread on GCP instance0 votes 6 comments
-
GATK4 MappingQualityReadFilter Answered0 votes 2 comments
-
Where do I find vcf files? Answered0 votes 2 comments
-
GATK - Variant Calling Answered0 votes 1 comment
-
GATK Denoise Read Counts Overcorrection0 votes 1 comment
-
Jointly calling samples from different studies, which have different read lengths? Answered0 votes 1 comment
-
VariantFiltration MQRankSum error: "-12.5 is not a recognized option"0 votes 7 comments
-
Slow execution of PathseqPipelineSpark Answered1 vote 2 comments
-
What is Cohort mode mean in calling germline CNV from Whole Exome Sequence data? Answered1 vote 3 comments
-
Questions About Somatic Panel Of Normals Answered0 votes 2 comments