New User Advice
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Workflow for WES/WGS0 votes 1 comment
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Struggling to assign read groups with AddOrReplaceReadgroups0 votes 2 comments
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Issue with Running MuTect in GATK Version Compatibility0 votes 3 comments
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GATK MarkDuplicates Missing output file1 vote 5 comments
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Somatic mutation detection in HLA regions using hg38 alt-aware alignments Answered0 votes 5 comments
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cnv_germline_case_workflow.wdl0 votes 3 comments
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GATK-SV HPC VM hardware requirements0 votes 1 comment
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CollectInsertSizeMetrics can't find R0 votes 6 comments
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STAR and GATK RNAseq based SNP detection0 votes 1 comment
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VCF file SNP ID missing0 votes 9 comments
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PICARD/Gradle build fail0 votes 3 comments
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Mitochondrial pipeline requirement0 votes 1 comment
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ExomeSingleSample wdl0 votes 1 comment
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get the basics for Haplotypecaller0 votes 2 comments
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BaitDesigner Fasta Output Missing Gene Names0 votes 1 comment
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Best practice with read groups0 votes 1 comment
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Download GATK4 required packages in docker container0 votes 1 comment
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Is It Allowed To Submit An Entire Code For Review?0 votes 2 comments
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Steps For GATK-gCNV pipleline on Exome Data0 votes 12 comments
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HaplotypeCaller produces VCF's from 1KG data that have low SNP overlap0 votes 1 comment
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Mutect2 PON0 votes 1 comment
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ApplyBQSR0 votes 10 comments
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Interval list and the “Mate not found” error in WES data0 votes 2 comments
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somatic CNV PoN0 votes 1 comment
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Mutect2 wdl interval list and scatter count0 votes 3 comments