New User Advice
Show no status
Sort by votes
-
Splitting a final filtered VCF file based on sample list and MAF Impact1 vote 2 comments
-
GATK MarkDuplicates Missing output file1 vote 5 comments
-
Scatter Gather principle by chromosome on Gatk1 vote 2 comments
-
Running best practices workflow step-by-step in command line1 vote 5 comments
-
Required arguement in MergeBamAlignment0 votes 1 comment
-
Asking for Guidance on Variant Calling Pipeline - Biological replicates0 votes 1 comment
-
CombineGVCFs or GenomicDBImport for consolidating haploid bacterial GVCFs0 votes 2 comments
-
Whole Genome pipe for use with non whole genome data0 votes 3 comments
-
Splitting .g.vcf file by chromosome.0 votes 1 comment
-
Struggling to assign read groups with AddOrReplaceReadgroups0 votes 2 comments
-
Workflow for WES/WGS0 votes 1 comment
-
Issue with Running MuTect in GATK Version Compatibility0 votes 3 comments
-
cnv_germline_case_workflow.wdl0 votes 3 comments
-
GATK-SV HPC VM hardware requirements0 votes 1 comment
-
CollectInsertSizeMetrics can't find R0 votes 6 comments
-
PICARD/Gradle build fail0 votes 3 comments
-
VCF file SNP ID missing0 votes 9 comments
-
Mitochondrial pipeline requirement0 votes 1 comment
-
ExomeSingleSample wdl0 votes 1 comment
-
get the basics for Haplotypecaller0 votes 2 comments
-
STAR and GATK RNAseq based SNP detection0 votes 1 comment
-
Best practice with read groups0 votes 1 comment
-
Download GATK4 required packages in docker container0 votes 1 comment
-
Is It Allowed To Submit An Entire Code For Review?0 votes 2 comments