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get the basics for Haplotypecaller0 votes 0 comments
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STAR and GATK RNAseq based SNP detection0 votes 0 comments
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Best practice with read groups0 votes 1 comment
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Download GATK4 required packages in docker container0 votes 1 comment
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Is It Allowed To Submit An Entire Code For Review?0 votes 2 comments
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Mutect2 PON0 votes 1 comment
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BaitDesigner Fasta Output Missing Gene Names0 votes 1 comment
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HaplotypeCaller produces VCF's from 1KG data that have low SNP overlap0 votes 1 comment
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Interval list and the “Mate not found” error in WES data0 votes 2 comments
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Steps For GATK-gCNV pipleline on Exome Data0 votes 12 comments
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somatic CNV PoN0 votes 1 comment
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Mutect2 wdl interval list and scatter count0 votes 3 comments
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gatk HaplotypeCaller generates Excessive Heterozygous SNPs in inbred lines0 votes 0 comments
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ApplyBQSR0 votes 10 comments
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GATK configration0 votes 5 comments
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MarkDuplicatesSpark Error0 votes 1 comment
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Genotype and AD in Mutect2 vcf output0 votes 1 comment
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Genome sequence analysis: preprocessing to variant analysis0 votes 0 comments
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Is there a way to preserve numeric genotypes with VariantsToTable?0 votes 2 comments
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VariantFiltration Issue0 votes 1 comment
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Markduplicates0 votes 5 comments
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Scatter Gather principle by chromosome on Gatk1 vote 2 comments
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Where can I download Homo_sapiens_assembly38.haplotype_database.txt0 votes 2 comments
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no gatk installation0 votes 0 comments
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GenomicsDB Import issues0 votes 1 comment