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UnsupportedOperationException: getFragment called for paired read0 votes 14 comments
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Steps For GATK-gCNV pipleline on Exome Data0 votes 12 comments
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ApplyBQSR0 votes 10 comments
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GenomiCDBImport issue0 votes 9 comments
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VCF file SNP ID missing0 votes 9 comments
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GATK Germline CNV calling0 votes 8 comments
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vcf to maf conversion & cloud application0 votes 7 comments
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Can I specify a targets file with Haplotypecaller?0 votes 7 comments
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DP for each variant bulk is skewed towards 50 and multiples of 500 votes 7 comments
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CollectInsertSizeMetrics can't find R0 votes 6 comments
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Unable to unzip GATK0 votes 5 comments
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Germline Variants Calling0 votes 5 comments
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GATK MarkDuplicates Missing output file1 vote 5 comments
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GATK configration0 votes 5 comments
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Markduplicates0 votes 5 comments
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Estimate genotype proportions from filtered variants0 votes 5 comments
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Running best practices workflow step-by-step in command line1 vote 5 comments
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Collecting alignment metrics at READ_GROUP level with Picard0 votes 4 comments
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Base Quality Score Recalibration doubt0 votes 4 comments
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gatk4.5 markduplicatesspark error spark0 votes 4 comments
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Contig names lost after FastaAlternateReferenceMaker0 votes 4 comments
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BQSR error0 votes 4 comments