New User Advice
Show no status
Sort by newest post
-
Workflow for WES/WGS0 votes 0 comments
-
Issue with Running MuTect in GATK Version Compatibility0 votes 3 comments
-
GATK MarkDuplicates Missing output file1 vote 5 comments
-
cnv_germline_case_workflow.wdl0 votes 3 comments
-
GATK-SV HPC VM hardware requirements0 votes 1 comment
-
CollectInsertSizeMetrics can't find R0 votes 6 comments
-
PICARD/Gradle build fail0 votes 3 comments
-
VCF file SNP ID missing0 votes 9 comments
-
Mitochondrial pipeline requirement0 votes 1 comment
-
ExomeSingleSample wdl0 votes 1 comment
-
get the basics for Haplotypecaller0 votes 2 comments
-
STAR and GATK RNAseq based SNP detection0 votes 1 comment
-
Best practice with read groups0 votes 1 comment
-
Download GATK4 required packages in docker container0 votes 1 comment
-
Is It Allowed To Submit An Entire Code For Review?0 votes 2 comments
-
Mutect2 PON0 votes 1 comment
-
BaitDesigner Fasta Output Missing Gene Names0 votes 1 comment
-
HaplotypeCaller produces VCF's from 1KG data that have low SNP overlap0 votes 1 comment
-
Interval list and the “Mate not found” error in WES data0 votes 2 comments
-
Steps For GATK-gCNV pipleline on Exome Data0 votes 12 comments
-
somatic CNV PoN0 votes 1 comment
-
Mutect2 wdl interval list and scatter count0 votes 3 comments
-
gatk HaplotypeCaller generates Excessive Heterozygous SNPs in inbred lines0 votes 0 comments
-
ApplyBQSR0 votes 10 comments
-
GATK configration0 votes 5 comments
-
MarkDuplicatesSpark Error0 votes 1 comment
-
Genotype and AD in Mutect2 vcf output0 votes 1 comment