Documentation Questions
Show no status
Sort by votes
-
Difference between the different annotation groups available in GATK2 votes 1 comment
-
gCNV2 votes 1 comment
-
GATK4.1.5 GenotypeGVCFs --annotation-group2 votes 1 comment
-
Active Regions Mutect2 Theory1 vote 3 comments
-
Issues with LiftoverVcf GRch37 to GRch381 vote 6 comments
-
FilterMutectCalls: Missing documentation for --mitochondria-mode1 vote 2 comments
-
HOW TO EXCLUDE FILTERED VARIANTS WITH VARIANTFILTRATION?1 vote 1 comment
-
License / use terms for GATK resource bundle1 vote 2 comments
-
Explanation on the HS Penalty metric1 vote 3 comments
-
Genotype filtering still write "PASS" in filter field1 vote 7 comments
-
Detailed reason for filtering by FilterMutectCalls1 vote 0 comments
-
Report file CreateExtendedIlluminaManifest Report file1 vote 1 comment
-
Calculating FQ or an FQ-like score from information in GATK4 vcf1 vote 1 comment
-
Conda for GATK40 votes 1 comment
-
Documentation search yields results for random versions0 votes 0 comments
-
How is QD calculate for multiple heterozygous samples?0 votes 1 comment
-
GATK HaplotypeCaller: only first chromosome in output vcf0 votes 4 comments
-
Incorrect documentation for mitochondria mode in Mutect20 votes 1 comment
-
GATK Somatic CNV Tumor only calling0 votes 4 comments
-
Please update the temp-dir parameter in the docs0 votes 2 comments
-
Cromwell call-caching size restriction0 votes 3 comments
-
Funcotator to search in NCBI rather than Ensemble Database0 votes 1 comment
-
Using Illumina Masked References with BWA MEM0 votes 2 comments
-
VariantRecalibrator Error about Argument 'resource' was missing0 votes 1 comment
-
JointGermlineCNVSegmentation (BETA)0 votes 2 comments
-
Somatic Calling with Mutect20 votes 1 comment