Documentation Questions
Show no status
Sort by comments
-
VCF allelic depth (AD) supports the reference or alternate?0 votes 13 comments
-
How to use the --alleles option of HaplotypeCaller ?0 votes 13 comments
-
GenotypeGVCFs generates an empty VCF file with all my samples0 votes 9 comments
-
Error while creating conda environment using gatkcondaenv.yml0 votes 8 comments
-
Genotype filtering still write "PASS" in filter field1 vote 7 comments
-
Issues with LiftoverVcf GRch37 to GRch381 vote 6 comments
-
Inconsistent output from SplitNCigarReads0 votes 6 comments
-
Converting Reference Genomes from b37 to hg190 votes 6 comments
-
Single sample germline - VQSR+CNN or just CNN0 votes 5 comments
-
GATK HaplotypeCaller: only first chromosome in output vcf0 votes 4 comments
-
GATK Somatic CNV Tumor only calling0 votes 4 comments
-
Broken GATK4 documentation links0 votes 4 comments
-
Difference of AT/GC dropout metric explanation between commands0 votes 4 comments
-
Picard MarkDuplicates Functionality0 votes 4 comments
-
BuildBamIndex0 votes 4 comments
-
Questions Regarding VCF Files Found in hg38 Public Resource Bundle0 votes 4 comments
-
Active Regions Mutect2 Theory1 vote 3 comments
-
Cromwell call-caching size restriction0 votes 3 comments
-
Broken image links in Phred article0 votes 3 comments
-
VariantFiltration failed0 votes 3 comments
-
What argument(s) should be used instead of --debug-graph-transformations?0 votes 3 comments
-
Explanation on the HS Penalty metric1 vote 3 comments
-
What does RAW_MQ annotation mean ?0 votes 3 comments
-
Picard CollectHsMetrics output0 votes 3 comments