Documentation Questions
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Active Regions Mutect2 Theory1 vote 3 comments
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Conda for GATK40 votes 1 comment
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Where is the list of annotations and annotation groups? Answered2 votes 8 comments
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Documentation search yields results for random versions0 votes 0 comments
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GATK HaplotypeCaller: only first chromosome in output vcf0 votes 4 comments
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How is QD calculate for multiple heterozygous samples?0 votes 1 comment
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Incorrect documentation for mitochondria mode in Mutect20 votes 1 comment
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Cromwell call-caching size restriction0 votes 3 comments
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GATK Somatic CNV Tumor only calling0 votes 4 comments
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Please update the temp-dir parameter in the docs0 votes 2 comments
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GenomAD files for MuTect2 Answered0 votes 12 comments
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GetPileupSummaries common germline variant sites VCF hg38 Answered0 votes 6 comments
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Funcotator to search in NCBI rather than Ensemble Database0 votes 1 comment
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Using Illumina Masked References with BWA MEM0 votes 2 comments
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Error while creating conda environment using gatkcondaenv.yml0 votes 8 comments
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Issues with LiftoverVcf GRch37 to GRch381 vote 6 comments
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VariantRecalibrator Error about Argument 'resource' was missing0 votes 1 comment
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JointGermlineCNVSegmentation (BETA)0 votes 2 comments
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how to run "gatk-register"? Answered0 votes 3 comments
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Broken GATK4 documentation links0 votes 4 comments
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Somatic Calling with Mutect20 votes 1 comment
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Broken image links in Phred article0 votes 3 comments
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CollectReadCounts : Incompatible contigs Error0 votes 1 comment
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How to use the --alleles option of HaplotypeCaller ?0 votes 13 comments