Documentation Questions

How is AC calculated?
- mk
- April 12, 2020 22:30
0 votes 1 comment
How are the QC annotations combined into a single site/allele specific annotation from each individual QC annotations, such as FS, SOR, ReadPosRankSum?
- WC
- April 10, 2020 19:40
- Edited
0 votes 1 comment
vcf files for BQSR step Answered
- Varun Gupta
- March 30, 2020 22:13
1 vote 4 comments
germline-resource Answered
- Juechen Yang
- March 17, 2020 17:32
0 votes 10 comments
Recent research papers on current GATK
- WVNicholson
- March 16, 2020 17:29
0 votes 1 comment
GATK4.1.5 GenotypeGVCFs --annotation-group
- hana lango allen
- March 12, 2020 16:06
2 votes 1 comment
Updating from GATK 3 to GATK4 Mutect2 commands
- Nisa Akhter
- March 10, 2020 08:09
0 votes 1 comment
CalculateGenotypePosteriors - pedigree relationships used
- GE
- February 10, 2020 22:54
0 votes 1 comment
Joint Variant Calling of samples coming from different batches (different genome build or target chip)
- Samreen Zafer
- January 28, 2020 23:04
0 votes 1 comment
postive AS_MQRankSum and VQSR
- timh
- January 23, 2020 12:18
0 votes 1 comment
Tooldoc Suggestions for GATK and Picard Answered
- johnma
- January 17, 2020 16:09
0 votes 1 comment
GATK Best Practices Mitochondrial Analysis Answered
- ajwils
- January 09, 2020 21:15
- Edited
1 vote 45 comments

Genome Analysis Toolkit