Webinar Discussion: Mutect2 [Nov 2020]
The webinar recording, slides, and information can be found here: https://gatk.broadinstitute.org/hc/en-us/articles/360059164932
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What's the minimal number of normal samples required to generate the SomaticPanelOfNormals? Answered0 votes 2 comments
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Is the seminar being recorded? Answered1 vote 0 comments
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What is the training data for the model - based filters? Answered0 votes 1 comment
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GetPileupSummaries following Mutect2: what inputs are suitable for --intervals (-L)? Answered0 votes 2 comments
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performance of indel calling by MuTect2 Answered1 vote 5 comments
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documentation for Mutect2 theory Answered0 votes 4 comments
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How do I prepare pon from my own data? Answered0 votes 8 comments
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Why do default read filters differ between tools used in GATK Best Practices Workflows? Answered0 votes 5 comments
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Is it correct to use Mutect2 to identify somatic variants from cell free DNA or from circulating tumour cells? Answered2 votes 5 comments