Non-Human
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AnalyzeCovaiates BQSR plots on canine data0 votes 3 comments
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Disable strandbias0 votes 1 comment
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False positive Indel calling with GATK v4.1.4.00 votes 1 comment
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ApplyBQSR reduces reads quality0 votes 3 comments
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Getting an error with genomicsdbimport0 votes 9 comments
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Missing MQ scores in gvcf0 votes 7 comments
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Why does GATK haplotype caller calls SNPs from soft-clipped bases?0 votes 1 comment
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Access to outdated forum discussion0 votes 2 comments
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Active Region Re-assembly Answered0 votes 2 comments
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GenotypeGVCFs stalls while using --all-sites Answered0 votes 37 comments
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HaplotypeCaller for haploid genome0 votes 7 comments
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No individual sample info in combineGVCF0 votes 4 comments
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Missing value evaluate as fail0 votes 5 comments
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Which exact info does BaseRecalibrator uses from a vcf?0 votes 7 comments
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Haplotype caller error; java.lang.IllegalStateException: Graph must have ref source and sink vertices Answered0 votes 6 comments
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Cannot run through CNVDiscoverypipeline0 votes 5 comments
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NumberFormatException Error in VariantFiltration0 votes 3 comments
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Excessive heterozygosity in haplotypecaller0 votes 3 comments
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java.lang.IllegalArgumentException: MALFORMED0 votes 3 comments
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Calculating the empirical allele frequency0 votes 2 comments
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Selectvariants - specific region0 votes 2 comments
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Likely true variants failing MQ40 filter in joint genotyping0 votes 2 comments
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Variant calling in Fish RNA-seq0 votes 3 comments