Non-Human
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GATK HaplotypeCaller OS Error - non-existent file or directory0 votes 3 comments
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Where are the sample-level annotations?0 votes 1 comment
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SAME READS has DIFFERENT VARIANTs0 votes 1 comment
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StrandBiasBySample SB in vcf Answered0 votes 10 comments
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VariantFiltration Answered0 votes 7 comments
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Error: ValidateSamFile Value was put into PairInfoMap more than once.0 votes 3 comments
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output stuck in GenotypeGVCFs0 votes 1 comment
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Keras error in CNNScoreVariants0 votes 7 comments
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MarkDuplicatesSpark running, but not sorting/creating deduped bam files0 votes 3 comments
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"No positional argument is defined" Error in HaplotypeCaller0 votes 5 comments
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About Bam file input problem in HaplotypCaller0 votes 6 comments
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CombineGVCFs splitting MNPs into individual positions0 votes 6 comments
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VQSR: how is insufficient variance inferred for annotations? Answered0 votes 7 comments
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Error Running IndexFeatureFile on Ensembl Mouse GTF file0 votes 1 comment
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gatk HaplotypeCaller gives me an empty vcf Answered0 votes 18 comments
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GenomicsDBimport not importing all the batches0 votes 18 comments
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haplotypecallerspark wants DS_Store0 votes 6 comments
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Missing samples from the output vcf file produced with GenotypeGVCFs0 votes 5 comments
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emit-ref-confidence error Answered0 votes 15 comments
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Genome STRiP - The output file of SVDiscovery is empty0 votes 4 comments
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REAL Variant not called by HaplotypeCaller Answered1 vote 4 comments
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Error Creatting Dictionary for genome Answered0 votes 12 comments
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MarkDuplicatesSpark not working on Putty0 votes 1 comment
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Weird log of genotypeGVCF0 votes 1 comment
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Why is GenotypeGVCF taking a long time for a smaller genome?0 votes 4 comments
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Exclude-intervals error with PathSeq0 votes 1 comment
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How do I call germline variants with multiple samples -non human? Answered0 votes 5 comments
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FixMateInformation does not solve ERROR:MATE_NOT_FOUND1 vote 7 comments