Non-Human

GATK GenotypeGVCFs stuck on starting traversal Answered
- Mary Happ
- November 11, 2021 19:38
- Edited
1 vote 9 comments
REAL Variant not called by HaplotypeCaller Answered
- HASSAN BADRANE
- December 15, 2020 23:45
1 vote 4 comments
GenomicsDBImport very slow on genome with many contigs Answered
- Marley Yeong
- April 02, 2020 15:22
1 vote 17 comments
known-sites for Felis_catus_9.0 (GCA_000181335.4) Answered
- Vladimir Makarov
- March 15, 2023 20:16
0 votes 4 comments
GenotypeGvcf tetraploids as diploids Answered
- julien leuenberger
- August 12, 2022 09:26
0 votes 4 comments
GATK for Rnor6 - Funcotator error Answered
- Ngoc Khoi Dang
- August 03, 2022 16:30
- Edited
0 votes 1 comment
java.lang.IllegalStateException in GenotypeGVCFs after GenomicsDBImport, GATK 4.2.6.1 Answered
- Zane Swaydan
- June 30, 2022 11:38
- Edited
0 votes 8 comments
FindBreakpointEvidenceSpark sudden shutdown Answered
- Domniki Manousi
- March 07, 2022 12:01
0 votes 4 comments
emit-ref-confidence error Answered
- Camila Martínez Avila
- February 08, 2022 00:44
0 votes 3 comments
gatk4-4.2.4.0-0 Fixmate Error Answered
- Abrish
- January 26, 2022 10:25
- Edited
0 votes 2 comments
GATK HaplotypeCaller disable filter -DF with the error in positional argument value Answered
- Frans Dany
- January 14, 2022 03:00
0 votes 1 comment
VariantEval does not work or something wrong with my ref genome and dbsnps? Answered
- Anh Mai
- January 04, 2022 10:45
0 votes 5 comments
ValidateSamFile Error Answered
- Abrish
- January 04, 2022 14:11
- Edited
0 votes 1 comment
Query regarding CombineGVCFs Answered
- Abrish
- December 20, 2021 17:54
0 votes 4 comments
Inconsistent variant call in some pool-seq samples Answered
- Lorena
- December 10, 2021 15:53
0 votes 3 comments
ArtificialHaplotypeRG makes variant heterozygous Answered
- Wiebe Kooistra
- September 29, 2021 14:34
0 votes 5 comments
gatk MarkDuplicatesSpark exits without error message Answered
- Ramesh Ramasamy
- July 22, 2021 01:15
- Edited
0 votes 3 comments
HaplotypeCaller with additional annotation? Answered
- Sarah Bonnin
- June 30, 2021 13:06
0 votes 5 comments
Issues while running GenotypeGVCFs Answered
- sanjeevksh
- June 25, 2021 04:16
- Edited
0 votes 11 comments
GenotypeGVCF: How can I know which sample falied in joint genotyping? Answered
- Vinod Kumar
- June 21, 2021 11:37
0 votes 5 comments
Receiving zero variants processed after HaplotypeCaller and Select Variants Answered
- Candace Grimes
- April 27, 2021 16:59
0 votes 4 comments
StrandBiasBySample SB in vcf Answered
- 羅Pichu
- February 28, 2021 22:47
0 votes 10 comments
VariantFiltration Answered
- ThierryGrange
- February 25, 2021 19:37
0 votes 7 comments
VQSR: how is insufficient variance inferred for annotations? Answered
- timh
- January 26, 2021 10:57
0 votes 7 comments
gatk HaplotypeCaller gives me an empty vcf Answered
- Marie Saitou
- January 23, 2021 10:12
0 votes 18 comments
emit-ref-confidence error Answered
- Florence Morel
- December 28, 2020 17:38
0 votes 15 comments
Error Creatting Dictionary for genome Answered
- Abrish
- December 15, 2020 12:19
- Edited
0 votes 16 comments
How do I call germline variants with multiple samples -non human? Answered
- Jody Hey
- November 20, 2020 16:15
0 votes 5 comments
Active Region Re-assembly Answered
- Ellen Weinheimer
- September 21, 2020 14:54
0 votes 2 comments
GenotypeGVCFs stalls while using --all-sites Answered
- Rachael Bay
- September 15, 2020 22:13
0 votes 37 comments

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