Non-Human
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gatk-microbialmode.jar1 vote 4 comments
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The expected variants were not detected for pig RNA-seq by GATK1 vote 8 comments
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GATK GenotypeGVCFs stuck on starting traversal Answered1 vote 9 comments
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GenotypeGVCF too many genotypes1 vote 1 comment
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REAL Variant not called by HaplotypeCaller Answered1 vote 4 comments
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FixMateInformation does not solve ERROR:MATE_NOT_FOUND1 vote 7 comments
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GATK-HaplotypeCaller results generate records with read depth of zero?1 vote 2 comments
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HaplotypeCaller for denovo RNAseq output1 vote 3 comments
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GenomicsDBImport very slow on genome with many contigs Answered1 vote 17 comments
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Analy1 vote 3 comments
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HaplotypeCaller does not recognize the RefSeqfile1 vote 2 comments
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Invariant sites with REF alleles longer than 10 votes 7 comments
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Why does the vcf file have AC=0 variation？0 votes 0 comments
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Can not create an Index file for my gvcf0 votes 6 comments
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Using "RNAseq short variant discovery" without known-sites VCF file0 votes 3 comments
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Difference in AD/GT output for HaplotypeCaller GVCF vs VCF0 votes 3 comments
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Haplotypecaller FORMAT:DP is affected by the interval in WGS0 votes 7 comments
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Can CalculateGenotypePosteriors be used on hard-filtered VCF0 votes 4 comments
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PlotDenoisedCopyRatios lead to empty result for non-human results0 votes 2 comments
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GATK for microbes0 votes 5 comments
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Interval issue with Mouse Variant Calling BaseRecalibrator0 votes 1 comment
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How to create a vcf file with variants of pooled lines?0 votes 5 comments
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GenotypeGVCFs generates empty vcf.gz files0 votes 9 comments
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AnalyzeCovariates were stopped.0 votes 4 comments
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Recalibration ApplyBQSR crash0 votes 3 comments
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GATK not replacing variants in reference sequence0 votes 9 comments