Non-Human
Show all
Sort by newest post
-
The expected variants were not detected for pig RNA-seq by GATK1 vote 7 comments
-
GatherVcfs to concatenate GVCFs0 votes 3 comments
-
GenotypeGvcf tetraploids as diploids Answered0 votes 4 comments
-
GATK for Rnor6 - Funcotator error Answered0 votes 1 comment
-
java.lang.IllegalStateException in GenotypeGVCFs after GenomicsDBImport, GATK 4.2.6.1 Answered0 votes 8 comments
-
All intervals were filtered in Filterintervals0 votes 11 comments
-
FindBreakpointEvidenceSpark sudden shutdown Answered0 votes 4 comments
-
emit-ref-confidence error Answered0 votes 3 comments
-
gatk4-4.2.4.0-0 Fixmate Error Answered0 votes 2 comments
-
GATK HaplotypeCaller disable filter -DF with the error in positional argument value Answered0 votes 1 comment
-
VariantEval does not work or something wrong with my ref genome and dbsnps? Answered0 votes 5 comments
-
ValidateSamFile Error Answered0 votes 1 comment
-
Query regarding CombineGVCFs Answered0 votes 4 comments
-
Inconsistent variant call in some pool-seq samples Answered0 votes 3 comments
-
GatherVcfs - File number limit?0 votes 3 comments
-
GATK GenotypeGVCFs stuck on starting traversal Answered0 votes 7 comments
-
How do iquery VCF for specific variants by CHROM and POS0 votes 3 comments
-
No downsampling with max-reads-per-alignment-start0 votes 3 comments
-
ArtificialHaplotypeRG makes variant heterozygous Answered0 votes 5 comments
-
Preform variant calling on 50 bp SE rna-seq data0 votes 4 comments
-
gatk MarkDuplicatesSpark exits without error message Answered0 votes 3 comments
-
HaplotypeCaller with additional annotation? Answered0 votes 5 comments
-
Issues while running GenotypeGVCFs Answered0 votes 11 comments
-
GenotypeGVCF: How can I know which sample falied in joint genotyping? Answered0 votes 5 comments
-
GenotypeGVCF too many genotypes0 votes 1 comment
-
Receiving zero variants processed after HaplotypeCaller and Select Variants Answered0 votes 4 comments