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HaplotypeCaller complains (in 2 different ways) about sample-name0 votes 12 comments
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Refseq accession number and version number in Funcotator Answered0 votes 4 comments
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No results of CollectvariantCallingMetrics Answered0 votes 30 comments
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CNNScoreVariants carshes with java.lang.NullPointerException Answered1 vote 13 comments
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CNNScoreVariants Issues with environment and Java version Answered0 votes 6 comments
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ApplyBQSR no positional argument is defined for this tool Answered0 votes 7 comments
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Fontconfig error in the newest gatk docker image Answered0 votes 1 comment
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Cromwell metadata of huge workflows0 votes 1 comment
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vulnerability issue for gatk-package-4.2.5.0-local.jar Answered0 votes 4 comments
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Error in GenomicsDBImport: Invalid deflate block found Answered1 vote 6 comments
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Genomestrip preprocessing error0 votes 13 comments
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Local WDL Mitochondria Pipeline - Import failed Answered0 votes 1 comment
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Error in running SplitNCigarReads - htsjdk.samtools.util.RuntimeIOException Answered0 votes 8 comments
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GC overhead limit exceeded using Mutect2 only tumor version Answered0 votes 5 comments
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Error in running GenomicsDBConfigException Answered0 votes 12 comments
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GATK R plots with R v4.1.2 Answered0 votes 3 comments
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--tmp-dir option user error Answered0 votes 13 comments
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change the memory when running SVPreprocess0 votes 2 comments
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Panel of Normals Documentation Answered1 vote 16 comments
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CollectRnaSeqMetrics GL000220 test not counting ribosomal reads Answered0 votes 5 comments
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VariantsToTable positional argument eror0 votes 1 comment
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GermlineCNVCaller edge case?0 votes 8 comments
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MarkduplicatesSpark failed Answered0 votes 3 comments
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Merge different individual VCF1 vote 11 comments
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Dictionary cannot have size zero error0 votes 1 comment
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Warning: Reading will be unbuffered. Answered1 vote 3 comments