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How to run muTect without normal sample? Answered1 vote 3 comments
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Accessing the resource bundle.0 votes 4 comments
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GenomeSTRiP SVPreprocess error1 vote 1 comment
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VCF input example Answered0 votes 1 comment
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GenomicsDBImport: Attempting to genotype more than 50 alleles Answered1 vote 9 comments
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Cannot use haplotype caller on STAR-aligned data Answered0 votes 2 comments
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MergeVcfs issue: Illegal character in fragment at index 1: ##fileformat=VCFv4.2 Answered0 votes 1 comment
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FindBadGenomicKmersSpark running indefinitely Answered0 votes 5 comments
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Using the IndexFeatureFile, doesn't recognize -F flag Answered0 votes 2 comments
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GenomicsDBImport works in interactive shell, but not in a script Answered0 votes 1 comment
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Haploytpe caller shows me that 0 read(s) were filtered by: MappingQualityAvailableReadFilter etc. Answered0 votes 4 comments
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MarkduplicatesSpark failed Answered0 votes 5 comments
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MarkDuplicatesSpark crash1 vote 10 comments
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markDuplicatesSpark running out of memory Answered0 votes 3 comments
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Hard filters on VariantFiltration following HaplotypeCaller; Filter contains an illegal character Answered0 votes 5 comments
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HaplotypeCaller complains (in 2 different ways) about sample-name0 votes 12 comments
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Refseq accession number and version number in Funcotator Answered0 votes 4 comments
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No results of CollectvariantCallingMetrics Answered0 votes 30 comments
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CNNScoreVariants carshes with java.lang.NullPointerException Answered1 vote 13 comments
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CNNScoreVariants Issues with environment and Java version Answered0 votes 6 comments
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ApplyBQSR no positional argument is defined for this tool Answered0 votes 7 comments
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Fontconfig error in the newest gatk docker image Answered0 votes 1 comment
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Cromwell metadata of huge workflows0 votes 1 comment
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vulnerability issue for gatk-package-4.2.5.0-local.jar Answered0 votes 4 comments
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Error in GenomicsDBImport: Invalid deflate block found Answered1 vote 6 comments
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Genomestrip preprocessing error0 votes 13 comments
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Local WDL Mitochondria Pipeline - Import failed Answered0 votes 1 comment