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GenomeSTRiP SVGenotyper not producing genotypes0 votes 2 comments
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GATK asereadcounter for single cell data0 votes 1 comment
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Error running FilterMutectCalls: alpha must be greater than 0 but got NaN0 votes 13 comments
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Interval Filtering -- How does it actually work?0 votes 4 comments
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error while running gatk GenotypeConcordance0 votes 2 comments
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How to run GenotypeConcordance0 votes 19 comments
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Threads parameters of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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FuncotatorDataSourceDownloader does not download latest version?0 votes 1 comment
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Weird parameter of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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Where and how I can get GenomeAnalysisTK.jar script?0 votes 1 comment
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gatk-4.1.8.1/ValidateVariants - bypass contig length check?0 votes 1 comment
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Error on FastaAlternateReferenceMaker process0 votes 1 comment
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how to interpret results of gatk Concordance0 votes 7 comments
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ASEReadCounter count each read only once or not0 votes 1 comment
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CompareSams with LENIENT_HEADER=true doesn't work0 votes 2 comments
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Asereadcounter getting gene level count0 votes 1 comment
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Error in running SplitNCigarReads - htsjdk.samtools.util.RuntimeIOException0 votes 6 comments
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SplitNCigarReads merge reads together0 votes 1 comment
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VQSR in variants on X chromosome1 vote 2 comments
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Need help on variant filtration0 votes 1 comment
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error-handling-end-exit-codes-in-gatk0 votes 1 comment
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Error in SplitNCigarReads0 votes 11 comments
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PathSeq output0 votes 3 comments
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Workshop materials0 votes 2 comments
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error in GATK mitochondria pipeline0 votes 7 comments
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Using stdin with GATK0 votes 1 comment
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How to make a 1kg_ref_panel_v1.ped?0 votes 1 comment