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How to merge approx 150 bam file using Picard0 votes 4 comments
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DepthOfCoverage in GATK4.1.9.0 with -gene-list option0 votes 4 comments
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Clarity on Variant Callers being "optimized for UMI-containing data"0 votes 1 comment
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BQSR no output table found0 votes 3 comments
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How do I get intermediate outputs from cromwell0 votes 1 comment
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Missing ReadPosRankSum, MQRankSum and BaseQRankSum Scores in VCF0 votes 1 comment
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Call-caching not functional running cromwell locally on GCP VM Answered0 votes 9 comments
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HaplotypeCaller - Shutting down engine - Encountering a large genome0 votes 5 comments
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Some stop positions of .interval_list is smaller than the start positions0 votes 2 comments
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GermlineCNVCaller edge case?0 votes 8 comments
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SVDiscovery OutOfMemoryError.0 votes 5 comments
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-DepthOfCoverage-ct not working in GATK 4.1.8.10 votes 5 comments
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No results of CollectvariantCallingMetrics Answered0 votes 30 comments
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how to set the minimum percentage of detectable mutation0 votes 0 comments
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How do I rename output folder created using glob (WDL-Cromwell)?1 vote 1 comment
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How to use Directory type as defined in WDL development spec0 votes 1 comment
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CalculateContamination Sample Source0 votes 1 comment
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Truncated bam file after running ReplaceSamHeader(Picard) Answered0 votes 6 comments
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PathSeq Generate K-mer Library0 votes 3 comments
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ValidateSamFile: New error after running BQSR0 votes 19 comments
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MitochondriaPipeline on merged Bams0 votes 4 comments
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Rename sample in vcd.idx file0 votes 1 comment
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IlluminaBasecallsToSam: How do I specify one unique RGID per output uBAM?0 votes 8 comments
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Resource bundle error download0 votes 7 comments