Other
Show all
Sort by newest post
-
Genome STRiP CNVDiscovery pipeline error0 votes 27 comments
-
Custom ReadFilter to ignore malformed reads ?0 votes 2 comments
-
Picard ExtractIlluminaBarcodes return NullPointerException error0 votes 4 comments
-
GATK4 HaplotypeCaller - read is malformed0 votes 2 comments
-
Getting CNNScoreVariants to run faster0 votes 3 comments
-
Broken GATK 3 documentation links0 votes 1 comment
-
HaplotypeCaller bam file path not recognized0 votes 7 comments
-
Dockerfile for genomes-in-the-cloud0 votes 5 comments
-
CreateSomaticPanelOfNormals fails0 votes 2 comments
-
Out of memory error using OpenJDK vs Oracle JDK for CNV-LOH2 votes 3 comments
-
Why does my vcf contain a genotype when there are no reads supporting it?0 votes 3 comments
-
Delete <NON_REF> from VCF0 votes 2 comments
-
Cohort vcf WES analysis0 votes 1 comment
-
Where did the GATK3 documentation go?0 votes 1 comment
-
Has -log_to_file been depreciated0 votes 1 comment
-
Fail to set up conda environment for GATK with the gatkcondaenv.yml file0 votes 5 comments
-
Question: Picard - MergeBamAlignment: Reads remaining on alignment iterator0 votes 4 comments
-
HaplotypeCaller produces very large .idx files1 vote 4 comments
-
What kind of statistical methods genome strip used?0 votes 3 comments
-
HaplotypeCaller complains (in 2 different ways) about sample-name0 votes 12 comments
-
Problem running GenomeSTRiP CNVDiscovery on X chromosome0 votes 5 comments
-
BI and BD tags.0 votes 2 comments
-
ValidateSamFile behavior1 vote 7 comments
-
WES covarage analysis0 votes 4 comments
-
<b>OUT OF OFFICE NOTICE</b>: GATK Team on holiday on Feb 17th 20200 votes 0 comments
-
User error: input files reference and features have incompatible contigs0 votes 8 comments