Other
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Base Recalibrator " No Positional Argument is defined for this tool"0 votes 0 comments
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Liftover Picard hg19 to hg38: variants were not successfully lifted over2 votes 2 comments
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HaplotypeCaller confuses introns as long deletions0 votes 3 comments
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error when running ASEReadCounter0 votes 2 comments
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SortSam - Question about I/O error0 votes 2 comments
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Does GATK4 BaseRecalibrator not understand relative paths?0 votes 10 comments
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CombineGVCFs - possible to restart/continue run?0 votes 5 comments
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CGA3_WES_Characterization_Pipeline_v0.2_Jun2019 PoN Errors...0 votes 1 comment
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GenomeSTRiP SVPreprocess error1 vote 1 comment
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Cromwell metadata of huge workflows0 votes 1 comment
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Genomestrip preprocessing error0 votes 13 comments
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change the memory when running SVPreprocess0 votes 2 comments
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VariantsToTable positional argument eror0 votes 1 comment
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Dictionary cannot have size zero error0 votes 1 comment
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HaplotypeCaller inconsistency with different interval lists0 votes 5 comments
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My recalibration table from BaseRecalibrator is empty0 votes 5 comments
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How do I keep a glob from copying a file in Cromwell / WDL0 votes 1 comment
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How to Fix the follow ValidateSamFile error ?0 votes 1 comment
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BaseRecalibrator on MT .bam files0 votes 1 comment
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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments