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CollectRnaSeqMetrics GL000220 test not counting ribosomal reads0 votes 3 comments
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Dictionary cannot have size zero error0 votes 1 comment
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HaplotypeCaller inconsistency with different interval lists0 votes 5 comments
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My recalibration table from BaseRecalibrator is empty0 votes 5 comments
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How do I keep a glob from copying a file in Cromwell / WDL0 votes 1 comment
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ApplyBQSR no positional argument is defined for this tool0 votes 5 comments
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How to Fix the follow ValidateSamFile error ?0 votes 1 comment
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BaseRecalibrator on MT .bam files0 votes 1 comment
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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments
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Checking ReadGroup name in BAM file with GATK instructions0 votes 1 comment
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How to work with CNN variant caller0 votes 3 comments
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HaplotypeCaller and Read Group Errors0 votes 1 comment
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filterSamReads stdout format error0 votes 15 comments
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Cromwell stuck at WaitingForReturnCode on Mac0 votes 3 comments
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Reference Fasta vs Alt Reference Fasta0 votes 2 comments
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HaplotypeCaller -ERC GVCF -variant_index_type LINEAR1 vote 1 comment
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Comparison between ReadsPipelineSpark and MarkDuplicates0 votes 7 comments
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Resource bundle for GRCh370 votes 2 comments
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Funcotator missing AF0 votes 1 comment
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MarkDuplicates0 votes 1 comment
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ASEReadCounter java.lang.ArrayIndexOutOfBoundsException: 00 votes 3 comments