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BaseRecalibrator on MT .bam files0 votes 1 comment
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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments
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Checking ReadGroup name in BAM file with GATK instructions0 votes 1 comment
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How to work with CNN variant caller0 votes 3 comments
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HaplotypeCaller and Read Group Errors0 votes 1 comment
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filterSamReads stdout format error0 votes 15 comments
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Cromwell stuck at WaitingForReturnCode on Mac0 votes 3 comments
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Map reads with alternate contigs0 votes 1 comment
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Reference Fasta vs Alt Reference Fasta0 votes 2 comments
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Mutect2: NuMTs filtering on RNA-seq0 votes 1 comment
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Realignment indels filtering 1000G0 votes 1 comment
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HaplotypeCaller -ERC GVCF -variant_index_type LINEAR0 votes 1 comment
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Comparison between ReadsPipelineSpark and MarkDuplicates0 votes 7 comments
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Resource bundle hg38 hosts corrupted VCF0 votes 1 comment
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Resource bundle for GRCh370 votes 1 comment
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Funcotator missing AF0 votes 1 comment
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MarkDuplicates0 votes 1 comment
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ASEReadCounter java.lang.ArrayIndexOutOfBoundsException: 00 votes 3 comments
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Any documents for 199 columns in Funcotator output?0 votes 2 comments
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Converting Reference Genomes from b37 to hg190 votes 4 comments
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How to merge approx 150 bam file using Picard0 votes 4 comments
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DepthOfCoverage in GATK4.1.9.0 with -gene-list option0 votes 4 comments
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Clarity on Variant Callers being "optimized for UMI-containing data"0 votes 1 comment
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BQSR no output table found0 votes 3 comments