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Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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Show answered All Planned Not planned Completed Answered No status Sort by newest post Newest post Recent activity Votes Comments
  • GenomeStrip SVPreprocess works with for a chromosome region; but fail for whole genome Answered
    • APato
    • February 03, 2020 21:28
    0 votes 10 comments
  • Variant Filtration - FS and SOR are not supported Answered
    • Khalil Jahed
    • January 22, 2020 22:01
    • Edited
    0 votes 1 comment
  • Known issue: old GATK forum inaccessible Answered
    • Tiffany Miller
    • January 23, 2020 17:47
    • Edited
    2 votes 3 comments
  • CNNScoreVariants carshes with java.lang.NullPointerException Answered
    • riederd
    • January 17, 2020 15:29
    1 vote 11 comments

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