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--tmp-dir option user error0 votes 10 comments
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change the memory when running SVPreprocess0 votes 2 comments
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Error in running GenomicsDBConfigException Answered0 votes 10 comments
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Panel of Normals Documentation Answered1 vote 16 comments
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CollectRnaSeqMetrics GL000220 test not counting ribosomal reads Answered0 votes 5 comments
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VariantsToTable positional argument eror0 votes 1 comment
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GermlineCNVCaller edge case?0 votes 8 comments
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MarkduplicatesSpark failed Answered0 votes 3 comments
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Merge different individual VCF0 votes 11 comments
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Dictionary cannot have size zero error0 votes 1 comment
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Warning: Reading will be unbuffered. Answered1 vote 3 comments
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Contamination calculation on single file don't detect contaminated samples Answered0 votes 7 comments
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No results of CollectvariantCallingMetrics Answered0 votes 26 comments
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GenomincsDBImport Failed to create reader from file: An index is required, but none found., for input source: Answered0 votes 6 comments
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markduplicatesSpark .bam.parts output error (directory already exists) Answered0 votes 3 comments
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How to set a COMPRESSION_LEVEL of ApplyBQSR0 votes 6 comments
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GenomicsDBImport: Attempting to genotype more than 50 alleles1 vote 2 comments
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Truncated bam file after running ReplaceSamHeader(Picard) Answered0 votes 6 comments
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HaplotypeCaller - Shutting down engine - Encountering a large genome0 votes 5 comments
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HaplotypeCaller inconsistency with different interval lists0 votes 5 comments
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My recalibration table from BaseRecalibrator is empty0 votes 5 comments
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Funcotator gnomAD MAF columns Answered0 votes 2 comments
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DepthofCoverage GATK4.1.7.0 -gene-list Answered0 votes 15 comments
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Can't explain the number of reads FilterSamReads outputs Answered0 votes 8 comments
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GenomeSTRiP SVPreprocess failed Answered0 votes 3 comments
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Call-caching not functional running cromwell locally on GCP VM Answered0 votes 9 comments
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Hi Can you please point me to the chain file for human_g1k_v37_decoy to hg19 conversion Answered0 votes 1 comment
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evaluation of the VCF file which is made using GATK Answered0 votes 2 comments