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HaplotypeCaller confuses introns as long deletions0 votes 4 comments
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MergeVcfs issue: Illegal character in fragment at index 1: ##fileformat=VCFv4.2 Answered0 votes 2 comments
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GaTK-3.3-0 download0 votes 2 comments
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Error in Running command GtcToVcf0 votes 4 comments
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FastaAlternateReferenceMaker generates same sequence for multisample vcf0 votes 1 comment
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Merge different individual VCF1 vote 11 comments
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GATK ContaminationModel0 votes 0 comments
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Picard LiftOver behaviour for multiallelic positions0 votes 1 comment
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ASEReadCounter does not return the value only for chrX0 votes 2 comments
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Error while running HaplotypeCaller0 votes 1 comment
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Liftover Picard hg19 to hg38: variants were not successfully lifted over2 votes 2 comments
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Invalid or corrupt jarfile error Answered0 votes 2 comments
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Does GATK4 BaseRecalibrator not understand relative paths?0 votes 10 comments
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CombineGVCFs - possible to restart/continue run?0 votes 5 comments
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error when running ASEReadCounter0 votes 2 comments
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SortSam - Question about I/O error0 votes 2 comments
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Broken: conda env create -n gatk -f gatkcondaenv.yml0 votes 17 comments
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ShiftFasta creates empty intervals file Answered0 votes 4 comments
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Error in Running command CreateExtendedIlluminaManifest Answered0 votes 3 comments
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Accessing the resource bundle. Answered0 votes 6 comments
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CGA3_WES_Characterization_Pipeline_v0.2_Jun2019 PoN Errors...0 votes 1 comment
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How can I build the GATK jar so that the intel native libraries are available? Answered0 votes 4 comments
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libgkl_compression.so not found + Failed to detect Google Compute Engine in a GATK workflow Answered0 votes 4 comments
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How to run muTect without normal sample? Answered1 vote 3 comments
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GenomeSTRiP SVPreprocess error1 vote 1 comment