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Comparison between ReadsPipelineSpark and MarkDuplicates0 votes 4 comments
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ValidateSamFile behavior1 vote 6 comments
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HaplotypeCaller -ERC GVCF -variant_index_type LINEAR0 votes 1 comment
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Resource bundle error download0 votes 3 comments
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Where's the DRAGEN?0 votes 3 comments
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jar for mutect 1.1.71 vote 5 comments
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Resource bundle for GRCh370 votes 1 comment
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Resource bundle hg38 hosts corrupted VCF0 votes 1 comment
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Setting SPARK resources when using the gatk release version0 votes 15 comments
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MarkDuplicates0 votes 1 comment
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Why does my vcf contain a genotype when there are no reads supporting it?0 votes 3 comments
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Funcotator missing AF0 votes 1 comment
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ASEReadCounter java.lang.ArrayIndexOutOfBoundsException: 00 votes 3 comments
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Any documents for 199 columns in Funcotator output?0 votes 1 comment
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Clarity on Variant Callers being "optimized for UMI-containing data"0 votes 1 comment
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Panel of Normals Documentation0 votes 10 comments
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Converting Reference Genomes from b37 to hg190 votes 2 comments
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How do I get intermediate outputs from cromwell0 votes 1 comment
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DepthOfCoverage in GATK4.1.9.0 with -gene-list option0 votes 2 comments
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How to merge approx 150 bam file using Picard0 votes 4 comments
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BQSR no output table found0 votes 3 comments
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Missing ReadPosRankSum, MQRankSum and BaseQRankSum Scores in VCF0 votes 1 comment
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SVDiscovery OutOfMemoryError.0 votes 5 comments
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MarkDuplicatesSpark crash1 vote 9 comments
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Call-caching not functional running cromwell locally on GCP VM0 votes 1 comment