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Clarity on Variant Callers being "optimized for UMI-containing data"0 votes 1 comment
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How do I get intermediate outputs from cromwell0 votes 1 comment
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Missing ReadPosRankSum, MQRankSum and BaseQRankSum Scores in VCF0 votes 1 comment
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How do I rename output folder created using glob (WDL-Cromwell)?1 vote 1 comment
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How to use Directory type as defined in WDL development spec0 votes 1 comment
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CalculateContamination Sample Source0 votes 1 comment
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Rename sample in vcd.idx file0 votes 1 comment
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genotype 0/0 if not SNPs identified by GATK0 votes 1 comment
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Old forum posts about FireCloud0 votes 1 comment
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Unable to create iterator for rod named variant0 votes 1 comment
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Error using liftovervcf to do hg18tohg190 votes 1 comment
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Threads parameters of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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FuncotatorDataSourceDownloader does not download latest version?0 votes 1 comment
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Weird parameter of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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Where and how I can get GenomeAnalysisTK.jar script?0 votes 1 comment
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gatk-4.1.8.1/ValidateVariants - bypass contig length check?0 votes 1 comment
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Error on FastaAlternateReferenceMaker process0 votes 1 comment
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How to make a 1kg_ref_panel_v1.ped?0 votes 1 comment
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Discord / Slack group0 votes 1 comment
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SelectVariants error0 votes 1 comment
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Variable region not considered active region by HaplotypeCaller0 votes 1 comment
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FilterMutectCalls failing filters0 votes 1 comment
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WDL RNA-seq Hisat20 votes 1 comment
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How to execute workflow locally without docker0 votes 1 comment
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Confusing GVCF results Answered0 votes 1 comment