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Custom ReadFilter to ignore malformed reads ?0 votes 2 comments
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GATK4 HaplotypeCaller - read is malformed0 votes 2 comments
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CreateSomaticPanelOfNormals fails0 votes 2 comments
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Out of memory error using OpenJDK vs Oracle JDK for CNV-LOH2 votes 2 comments
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Delete <NON_REF> from VCF0 votes 2 comments
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BI and BD tags.0 votes 2 comments
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Cannot get AddOrReplaceReadGroups to run0 votes 2 comments
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GATK on Oracle Cloud Infrastructure0 votes 2 comments
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Where to find old discussion0 votes 2 comments
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Feature request: Restore the StrandAlleleCount annotation from GATK30 votes 2 comments
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Accessing the resource bundle.0 votes 1 comment
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Fontconfig error in the newest gatk docker image Answered0 votes 1 comment
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Cromwell metadata of huge workflows0 votes 1 comment
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Local WDL Mitochondria Pipeline - Import failed Answered0 votes 1 comment
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VariantsToTable positional argument eror0 votes 1 comment
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Dictionary cannot have size zero error0 votes 1 comment
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Hi Can you please point me to the chain file for human_g1k_v37_decoy to hg19 conversion Answered0 votes 1 comment
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Funcotator missing cDNA, Codon, and Protein Change for some chromosomes Answered0 votes 1 comment
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How do I keep a glob from copying a file in Cromwell / WDL0 votes 1 comment
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How to Fix the follow ValidateSamFile error ?0 votes 1 comment
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BaseRecalibrator on MT .bam files0 votes 1 comment
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Checking ReadGroup name in BAM file with GATK instructions0 votes 1 comment
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HaplotypeCaller and Read Group Errors0 votes 1 comment
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HaplotypeCaller -ERC GVCF -variant_index_type LINEAR1 vote 1 comment
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Funcotator missing AF0 votes 1 comment
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MarkDuplicates0 votes 1 comment