Other
Show all
Sort by newest post
-
genotype 0/0 if not SNPs identified by GATK0 votes 1 comment
-
Clear missing variant from HaplotypeCaller0 votes 9 comments
-
Old forum posts about FireCloud0 votes 1 comment
-
Unable to create iterator for rod named variant0 votes 1 comment
-
Empty VCF file from Mutect2 v. GATK 4.1.6.0 in tumor only mode0 votes 7 comments
-
Error using liftovervcf to do hg18tohg190 votes 1 comment
-
GenomeSTRiP SVGenotyper not producing genotypes0 votes 2 comments
-
Error running FilterMutectCalls: alpha must be greater than 0 but got NaN0 votes 13 comments
-
Interval Filtering -- How does it actually work?0 votes 4 comments
-
error while running gatk GenotypeConcordance0 votes 2 comments
-
How to run GenotypeConcordance0 votes 19 comments
-
Threads parameters of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
-
FuncotatorDataSourceDownloader does not download latest version?0 votes 1 comment
-
Weird parameter of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
-
Where and how I can get GenomeAnalysisTK.jar script?0 votes 1 comment
-
gatk-4.1.8.1/ValidateVariants - bypass contig length check?0 votes 1 comment
-
Error on FastaAlternateReferenceMaker process0 votes 1 comment
-
CompareSams with LENIENT_HEADER=true doesn't work0 votes 2 comments
-
Error in running SplitNCigarReads - htsjdk.samtools.util.RuntimeIOException Answered0 votes 9 comments
-
Error in SplitNCigarReads0 votes 11 comments
-
PathSeq output0 votes 3 comments
-
Workshop materials0 votes 2 comments
-
error in GATK mitochondria pipeline0 votes 7 comments
-
How to make a 1kg_ref_panel_v1.ped?0 votes 1 comment
-
--tmp-dir option user error Answered0 votes 13 comments
-
GenomicsDBImport: Attempting to genotype more than 50 alleles Answered1 vote 10 comments