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resource bundle b370 votes 1 comment
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MarkDuplicatesSparks not removing some duplicates?0 votes 15 comments
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copyright issue0 votes 2 comments
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Genomestrip cannot find --ploidyMapFile0 votes 9 comments
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IlluminaBasecallsToSam - barcode was not expected0 votes 1 comment
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When will AnalyzeCovariates support R/4.00 votes 1 comment
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Error when running FastaAlternateReferenceMaker0 votes 1 comment
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humanG1Kv37 to hg38 liftover issues0 votes 3 comments
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Error in running CollectGcBiasMetrics0 votes 1 comment
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ReciprocalOverlapAnnotator error for Illumina data (both ERDS and CNVnator)0 votes 5 comments
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Mutect2: mitochondria mode weird0 votes 2 comments
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SelectVariants v4.1.6.0 doesn't select the variants as expected Answered0 votes 8 comments
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something wrong with MarkDuplicatesSpark0 votes 1 comment
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GenotypeGVCF Output Only 1 Locus0 votes 1 comment
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Can't open VCF File0 votes 2 comments
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newbie question: how to split a genome bam file by using picard0 votes 8 comments
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DepthofCoverage GATK4.1.7.0 -gene-list Answered0 votes 15 comments
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CombineGVCF slowing down at certain region on chromosome 10 votes 3 comments
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gatk4-mitochondria-pipeline Problems0 votes 1 comment
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GenomeStrip prepare summary metadata by chromosome?0 votes 2 comments
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Setting SPARK resources when using the gatk release version0 votes 15 comments
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No depth information in INFO column0 votes 2 comments
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Depthofcoverage interval summary file is empty0 votes 1 comment
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Recal file with malformed header0 votes 9 comments
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Read counts in vcf files do not reflect local realignments0 votes 2 comments
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RemoveNearbyIndels: CRSP0 votes 6 comments
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HaplotypeCaller on multiple BAMs vs Joint-Call Cohort0 votes 3 comments
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Output vcf file from HaplotypeCaller mostlly contain <NON_REF> alteration0 votes 3 comments