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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments
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How to work with CNN variant caller0 votes 3 comments
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Mitochondrial analysis - FilterMutectCalls autosomal-coverage is not an option Answered0 votes 3 comments
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Cromwell stuck at WaitingForReturnCode on Mac0 votes 3 comments
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ASEReadCounter java.lang.ArrayIndexOutOfBoundsException: 00 votes 3 comments
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BQSR no output table found0 votes 3 comments
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PathSeq Generate K-mer Library0 votes 3 comments
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PathSeq output0 votes 3 comments
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Error: Invalid or corrupt jarfile cromwell-52.jar0 votes 3 comments
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Warning: Reading will be unbuffered. Answered1 vote 3 comments
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humanG1Kv37 to hg38 liftover issues0 votes 3 comments
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CombineGVCF slowing down at certain region on chromosome 10 votes 3 comments
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HaplotypeCaller on multiple BAMs vs Joint-Call Cohort0 votes 3 comments
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Output vcf file from HaplotypeCaller mostlly contain <NON_REF> alteration0 votes 3 comments
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Cromwell GATK json list of files0 votes 3 comments
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Mutect2-exome-panel.vcf Not Found0 votes 3 comments
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multiple vcf files in FastaAlternateReferenceMaker0 votes 3 comments
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VariantFiltration Invalid Argument0 votes 3 comments
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GATK/Picard does not detect mates in paired-end BAM1 vote 3 comments
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GenotypeGVCFs: unexpected output in PGT and PID fields0 votes 3 comments
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Getting CNNScoreVariants to run faster0 votes 3 comments
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Why does my vcf contain a genotype when there are no reads supporting it?0 votes 3 comments
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What kind of statistical methods genome strip used?0 votes 3 comments