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run SVPreprocess and SVGenotyper for each sample0 votes 7 comments
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Variable region not considered active region by HaplotypeCaller0 votes 1 comment
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Fatal error occuring during GATK4 PathSeqPipeline tool run0 votes 15 comments
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FilterMutectCalls failing filters0 votes 1 comment
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WDL RNA-seq Hisat20 votes 1 comment
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How to execute workflow locally without docker0 votes 1 comment
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mitochondria_m2_wdl: MitochondriaPipeline Issues0 votes 12 comments
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RealignerTargetCreator0 votes 2 comments
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Confusing GVCF results Answered0 votes 1 comment
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Warning: Reading will be unbuffered. Answered1 vote 3 comments
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Merge different individual VCF0 votes 11 comments
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Extract individual samples from combined gvcf file0 votes 1 comment
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Inquiry about the GATK Best Practices for variant calling on RNAseq0 votes 1 comment
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gatk3-register0 votes 1 comment
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How to reduce the processing time of BwaMemIndexImageCreator Answered0 votes 2 comments
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evaluation of the VCF file which is made using GATK Answered0 votes 2 comments
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resource bundle b370 votes 1 comment
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MarkDuplicatesSparks not removing some duplicates?0 votes 15 comments
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copyright issue0 votes 2 comments
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Genomestrip cannot find --ploidyMapFile0 votes 9 comments
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IlluminaBasecallsToSam - barcode was not expected0 votes 1 comment
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When will AnalyzeCovariates support R/4.00 votes 1 comment
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Error when running FastaAlternateReferenceMaker0 votes 1 comment
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humanG1Kv37 to hg38 liftover issues0 votes 3 comments
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Error in running CollectGcBiasMetrics0 votes 1 comment
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ReciprocalOverlapAnnotator error for Illumina data (both ERDS and CNVnator)0 votes 5 comments