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CompareSams with LENIENT_HEADER=true doesn't work0 votes 2 comments
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Error in running SplitNCigarReads - htsjdk.samtools.util.RuntimeIOException Answered0 votes 8 comments
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Error in SplitNCigarReads0 votes 11 comments
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PathSeq output0 votes 3 comments
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Workshop materials0 votes 2 comments
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error in GATK mitochondria pipeline0 votes 7 comments
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How to make a 1kg_ref_panel_v1.ped?0 votes 1 comment
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--tmp-dir option user error Answered0 votes 13 comments
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GenomicsDBImport: Attempting to genotype more than 50 alleles1 vote 9 comments
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GenomicsDBImport: has too many genotypes in the combined VCF record1 vote 2 comments
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Discord / Slack group0 votes 1 comment
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ERROR MESSAGE: No gender data for sample:sample70 votes 15 comments
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Error: Invalid or corrupt jarfile cromwell-52.jar0 votes 3 comments
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Speeding up GATK4 DepthOfCoverage0 votes 2 comments
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SelectVariants error0 votes 1 comment
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Dosages with Mutect20 votes 6 comments
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GATK mark duplicates error0 votes 2 comments
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run SVPreprocess and SVGenotyper for each sample0 votes 7 comments
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Variable region not considered active region by HaplotypeCaller0 votes 1 comment
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Fatal error occuring during GATK4 PathSeqPipeline tool run0 votes 15 comments
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FilterMutectCalls failing filters0 votes 1 comment
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WDL RNA-seq Hisat20 votes 1 comment
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How to execute workflow locally without docker0 votes 1 comment
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mitochondria_m2_wdl: MitochondriaPipeline Issues0 votes 12 comments