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Interval Filtering -- How does it actually work?0 votes 4 comments
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Picard CollectHsMetrics PCT_EXC_OFF_TARGET1 vote 4 comments
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A USER ERROR has occurred: Number of read groups must be >= 1, but is 00 votes 4 comments
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Do I need to perform fastqc and adapters trimming before gatk pipeline?1 vote 4 comments
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ValidateSamFile tmp not found ERROR with not output or Exception0 votes 4 comments
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Picard ExtractIlluminaBarcodes return NullPointerException error0 votes 4 comments
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Question: Picard - MergeBamAlignment: Reads remaining on alignment iterator0 votes 4 comments
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HaplotypeCaller produces very large .idx files1 vote 4 comments
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WES covarage analysis0 votes 4 comments
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GATK R plots with R v4.1.2 Answered0 votes 3 comments
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MarkduplicatesSpark failed Answered0 votes 3 comments
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markduplicatesSpark .bam.parts output error (directory already exists) Answered0 votes 3 comments
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GenomeSTRiP SVPreprocess failed Answered0 votes 3 comments
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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments
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How to work with CNN variant caller0 votes 3 comments
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Mitochondrial analysis - FilterMutectCalls autosomal-coverage is not an option Answered0 votes 3 comments
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Cromwell stuck at WaitingForReturnCode on Mac0 votes 3 comments
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ASEReadCounter java.lang.ArrayIndexOutOfBoundsException: 00 votes 3 comments
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BQSR no output table found0 votes 3 comments
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PathSeq Generate K-mer Library0 votes 3 comments
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PathSeq output0 votes 3 comments
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Error: Invalid or corrupt jarfile cromwell-52.jar0 votes 3 comments
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Warning: Reading will be unbuffered. Answered1 vote 3 comments