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error while running gatk GenotypeConcordance0 votes 2 comments
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How to run GenotypeConcordance0 votes 19 comments
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Threads parameters of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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FuncotatorDataSourceDownloader does not download latest version?0 votes 1 comment
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Weird parameter of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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Where and how I can get GenomeAnalysisTK.jar script?0 votes 1 comment
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gatk-4.1.8.1/ValidateVariants - bypass contig length check?0 votes 1 comment
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Error on FastaAlternateReferenceMaker process0 votes 1 comment
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CompareSams with LENIENT_HEADER=true doesn't work0 votes 2 comments
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Error in running SplitNCigarReads - htsjdk.samtools.util.RuntimeIOException0 votes 6 comments
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Error in SplitNCigarReads0 votes 11 comments
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PathSeq output0 votes 3 comments
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Workshop materials0 votes 2 comments
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error in GATK mitochondria pipeline0 votes 7 comments
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How to make a 1kg_ref_panel_v1.ped?0 votes 1 comment
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--tmp-dir option user error0 votes 10 comments
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GenomicsDBImport: Attempting to genotype more than 50 alleles1 vote 2 comments
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GenomicsDBImport: has too many genotypes in the combined VCF record1 vote 2 comments
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Discord / Slack group0 votes 1 comment
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ERROR MESSAGE: No gender data for sample:sample70 votes 15 comments
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Error: Invalid or corrupt jarfile cromwell-52.jar0 votes 3 comments
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Speeding up GATK4 DepthOfCoverage0 votes 2 comments
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SelectVariants error0 votes 1 comment
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Dosages with Mutect20 votes 6 comments
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GATK mark duplicates error0 votes 2 comments