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CalculateContamination Sample Source0 votes 1 comment
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Truncated bam file after running ReplaceSamHeader(Picard) Answered0 votes 6 comments
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PathSeq Generate K-mer Library0 votes 3 comments
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ValidateSamFile: New error after running BQSR0 votes 19 comments
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MitochondriaPipeline on merged Bams0 votes 4 comments
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Rename sample in vcd.idx file0 votes 1 comment
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IlluminaBasecallsToSam: How do I specify one unique RGID per output uBAM?0 votes 8 comments
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Resource bundle error download0 votes 7 comments
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GenomicsDBImport running out of memory?0 votes 8 comments
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genotype 0/0 if not SNPs identified by GATK0 votes 1 comment
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Clear missing variant from HaplotypeCaller0 votes 9 comments
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Old forum posts about FireCloud0 votes 1 comment
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Unable to create iterator for rod named variant0 votes 1 comment
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Empty VCF file from Mutect2 v. GATK 4.1.6.0 in tumor only mode0 votes 7 comments
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Error using liftovervcf to do hg18tohg190 votes 1 comment
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GenomeSTRiP SVGenotyper not producing genotypes0 votes 2 comments
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Error running FilterMutectCalls: alpha must be greater than 0 but got NaN0 votes 13 comments
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Interval Filtering -- How does it actually work?0 votes 4 comments
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error while running gatk GenotypeConcordance0 votes 2 comments
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How to run GenotypeConcordance0 votes 19 comments
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Threads parameters of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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FuncotatorDataSourceDownloader does not download latest version?0 votes 1 comment
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Weird parameter of Depth of coverage (GATK4.1.7.0 beta version)0 votes 1 comment
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Where and how I can get GenomeAnalysisTK.jar script?0 votes 1 comment
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gatk-4.1.8.1/ValidateVariants - bypass contig length check?0 votes 1 comment
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Error on FastaAlternateReferenceMaker process0 votes 1 comment