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Contamination calculation on single file don't detect contaminated samples Answered0 votes 7 comments
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GenomincsDBImport Failed to create reader from file: An index is required, but none found., for input source: Answered0 votes 6 comments
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markduplicatesSpark .bam.parts output error (directory already exists) Answered0 votes 3 comments
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HaplotypeCaller inconsistency with different interval lists0 votes 5 comments
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My recalibration table from BaseRecalibrator is empty0 votes 5 comments
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Funcotator gnomAD MAF columns Answered0 votes 2 comments
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Can't explain the number of reads FilterSamReads outputs Answered0 votes 8 comments
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GenomeSTRiP SVPreprocess failed Answered0 votes 3 comments
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Hi Can you please point me to the chain file for human_g1k_v37_decoy to hg19 conversion Answered0 votes 1 comment
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Docker image for GATK3 version 3.7 Answered0 votes 2 comments
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Funcotator missing cDNA, Codon, and Protein Change for some chromosomes Answered0 votes 1 comment
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Picard liftover Issue bostau8 to bostau6 Answered0 votes 2 comments
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DepthOfCoverage with -gene-list and readgroup as --partition-type options Answered0 votes 7 comments
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How do I keep a glob from copying a file in Cromwell / WDL0 votes 1 comment
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ApplyBQSR no positional argument is defined for this tool Answered0 votes 7 comments
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How to Fix the follow ValidateSamFile error ?0 votes 1 comment
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BaseRecalibrator on MT .bam files0 votes 1 comment
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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments
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Checking ReadGroup name in BAM file with GATK instructions0 votes 1 comment
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How to work with CNN variant caller0 votes 3 comments
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Mitochondrial analysis - FilterMutectCalls autosomal-coverage is not an option Answered0 votes 3 comments
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HaplotypeCaller and Read Group Errors0 votes 1 comment
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filterSamReads stdout format error0 votes 15 comments
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Cromwell stuck at WaitingForReturnCode on Mac0 votes 3 comments