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How to use Directory type as defined in WDL development spec0 votes 1 comment
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CalculateContamination Sample Source0 votes 1 comment
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HaplotypeCaller vcf file analysis0 votes 1 comment
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Counld I use bam files from HISAT2 to call snp/indels?0 votes 1 comment
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Unix pipe support and SAM fields used in Variant Calling pipeline0 votes 1 comment
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Combining libraries for sample0 votes 1 comment
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Truncated bam file after running ReplaceSamHeader(Picard)0 votes 4 comments
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PathSeq Generate K-mer Library0 votes 3 comments
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ValidateSamFile: New error after running BQSR0 votes 19 comments
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How to stop FastaAlternateReferenceMaker from renaming my chromosomes?0 votes 6 comments
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Where do I find guidance on when to mark duplicates a second time?1 vote 1 comment
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MitochondriaPipeline on merged Bams0 votes 4 comments
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Rename sample in vcd.idx file0 votes 1 comment
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Converting .bam to .fq and vice versa0 votes 1 comment
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IlluminaBasecallsToSam: How do I specify one unique RGID per output uBAM?0 votes 8 comments
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Resource bundle error download0 votes 3 comments
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GenomicsDBImport running out of memory?0 votes 8 comments
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Where do I find sample dataset for practice?0 votes 2 comments
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VariantsToTable not extracting INFO 'sub-fields'0 votes 3 comments
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genotype 0/0 if not SNPs identified by GATK0 votes 1 comment
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Clear missing variant from HaplotypeCaller0 votes 9 comments
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Old forum posts about FireCloud0 votes 1 comment
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Unable to create iterator for rod named variant0 votes 1 comment
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Can gatk be used to process Hi-C data?0 votes 1 comment
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Empty VCF file from Mutect2 v. GATK 4.1.6.0 in tumor only mode0 votes 7 comments