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Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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Show all All Planned Not planned Completed Answered No status Sort by newest post Newest post Recent activity Votes Comments
  • AS_MQRanksum craches R script VQSR
    • timh
    • January 23, 2020 12:08
    0 votes 8 comments
  • Variant Filtration - FS and SOR are not supported Answered
    • Khalil Jahed
    • January 22, 2020 22:01
    • Edited
    0 votes 1 comment
  • Where to find old discussion
    • Khalil Jahed
    • January 22, 2020 16:04
    0 votes 2 comments
  • Known issue: old GATK forum inaccessible Answered
    • Tiffany Miller
    • January 23, 2020 17:47
    • Edited
    2 votes 3 comments
  • CNNScoreVariants carshes with java.lang.NullPointerException Answered
    • riederd
    • January 17, 2020 15:29
    1 vote 13 comments
  • Feature request: Restore the StrandAlleleCount annotation from GATK3
    • johnma
    • January 12, 2020 16:24
    0 votes 2 comments
  • Any automatic downloadable gatk3?
    • ale
    • January 09, 2020 13:16
    2 votes 13 comments
  • MarkDuplicatesSpark crash
    • David Gómez-Sánchez
    • January 07, 2020 17:02
    1 vote 9 comments
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