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Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

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Show all All Planned Not planned Completed Answered No status Sort by comments Newest post Recent activity Votes Comments
  • Typos in docs
    • Andrea Haessly
    • January 29, 2020 20:47
    1 vote 1 comment
  • Run ReorderSam faster with
    • efratushava
    • January 28, 2020 08:40
    0 votes 1 comment
  • Vcf-annotate does not work
    • Ilya Ogurtsov
    • January 25, 2020 22:30
    0 votes 1 comment
  • How to configure Cromwell to resume execution at point of failure or interruption?
    • Naser Elmi
    • January 25, 2020 13:00
    • Edited
    0 votes 1 comment
  • How to use same input directory and files in each Task of WDL pipeline on local system?
    • Naser Elmi
    • January 25, 2020 12:51
    0 votes 1 comment
  • Variant Filtration - FS and SOR are not supported Answered
    • Khalil Jahed
    • January 22, 2020 22:01
    • Edited
    0 votes 1 comment
  • how to set the minimum percentage of detectable mutation
    • Safa.J
    • November 27, 2020 20:37
    0 votes 0 comments
  • <b>OUT OF OFFICE NOTICE</b>: GATK Team on holiday on Feb 17th 2020
    • Bhanu Gandham
    • February 15, 2020 18:20
    0 votes 0 comments
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