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Can't explain the number of reads FilterSamReads outputs0 votes 0 comments
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GenomeSTRiP SVPreprocess failed0 votes 3 comments
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Hi Can you please point me to the chain file for human_g1k_v37_decoy to hg19 conversion Answered0 votes 1 comment
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Docker image for GATK3 version 3.7 Answered0 votes 2 comments
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Funcotator missing cDNA, Codon, and Protein Change for some chromosomes Answered0 votes 1 comment
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Picard liftover Issue bostau8 to bostau6 Answered0 votes 2 comments
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DepthOfCoverage with -gene-list and readgroup as --partition-type options Answered0 votes 7 comments
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How do I keep a glob from copying a file in Cromwell / WDL0 votes 1 comment
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ApplyBQSR no positional argument is defined for this tool0 votes 5 comments
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How to Fix the follow ValidateSamFile error ?0 votes 1 comment
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BaseRecalibrator on MT .bam files0 votes 1 comment
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LiftoverVcf: hg19 to hg38 all variants mismatched0 votes 3 comments
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Checking ReadGroup name in BAM file with GATK instructions0 votes 1 comment
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How to work with CNN variant caller0 votes 3 comments
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Mitochondrial analysis - FilterMutectCalls autosomal-coverage is not an option Answered0 votes 3 comments
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HaplotypeCaller and Read Group Errors0 votes 1 comment
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filterSamReads stdout format error0 votes 15 comments
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Cromwell stuck at WaitingForReturnCode on Mac0 votes 3 comments
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Reference Fasta vs Alt Reference Fasta0 votes 2 comments
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Mutect2: NuMTs filtering on RNA-seq Answered0 votes 2 comments
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HaplotypeCaller -ERC GVCF -variant_index_type LINEAR0 votes 1 comment
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Comparison between ReadsPipelineSpark and MarkDuplicates0 votes 7 comments
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Resource bundle for GRCh370 votes 2 comments