Somatic
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Mutect stats table not found.0 votes 1 comment
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Error while running ModelSegments Answered0 votes 3 comments
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GGA-mode gives PASS tag while the site failed in the normal workflow0 votes 9 comments
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Called Somatic Mutations High Frequency of C>A SNVs0 votes 6 comments
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SAMException: Value was put into PairInfoMap more than once Answered0 votes 5 comments
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Mutect2 Funcotator interval error Answered0 votes 3 comments
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Funcotator error: StringIndexOutOfBoundsException Answered0 votes 6 comments
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empty pon vcf file Answered1 vote 1 comment
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MarkDuplicates TAG_DUPLICATE_SET_MEMBERS=true does not add DS and DI tags in the output BAM file Answered0 votes 3 comments
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missing file: Callset.json , when creating PON Answered0 votes 3 comments
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Funconator's ignore-filtered-variants is not a recognized option0 votes 1 comment
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Why do I see a variant called by mutect2 in my matched-normal sample when checking the results? Answered0 votes 10 comments
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How mutect2 panel of normal works? Answered0 votes 8 comments
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Mutect2 calls long deletion with absolutely zero read support Answered0 votes 1 comment
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Mutect2 issue with --force-active: not all regions are active1 vote 21 comments
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[Repost] Wrong annotation with Funcotator 1.7 Answered0 votes 10 comments
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Deletion is split into two deletions Answered0 votes 1 comment
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Running Mutect 2 with matched normal vs tumor mode0 votes 3 comments
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AnalyzeCovariates Answered0 votes 9 comments
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Why do I get 'java.lang.IllegalArgumentException: Dictionary cannot have size zero' when using GetPileupSummaries? Answered0 votes 12 comments
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CollectAllelicCounts- Exception in thread "main" java.lang.OutOfMemoryError: GC overhead limit exceeded Answered0 votes 12 comments
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Not generating denoisedLimit4.png with PlotModeledSegments0 votes 4 comments
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Mutect2 - Joint calling Answered0 votes 8 comments
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Incorrect Annotation from Funcotator Answered0 votes 5 comments
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Error initializing feature reader for path somatic-hg38_1000g_pon.hg38.vcf.gz Answered0 votes 8 comments
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bwa index doesn't create .alt file in hg38 Answered1 vote 8 comments