Somatic
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PoN: Mutect2 error0 votes 7 comments
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SplitIntervals Random or Not?0 votes 2 comments
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Using LearnReadOrientationModel produces new mutations?0 votes 2 comments
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Where are LearnReadOrientationModel docs?0 votes 2 comments
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Best practice to process a multisample mutect2 vcf0 votes 2 comments
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Mutect2 Questions0 votes 4 comments
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CNV Discovery pipeline error0 votes 1 comment
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Mutect2 Tumor-only calling of variants with high AF?0 votes 3 comments
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Mutect2 - issue with long scaffolds (non-human/mouse)0 votes 2 comments
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Parallelizing Mutect20 votes 10 comments
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Different read statistics for a common control sample in two Mutect2 runs0 votes 2 comments
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FilterAlignmentArtifacts error0 votes 4 comments
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HaplotypeCaller fails with Exit code 3, but no further information is given0 votes 3 comments
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Mutect2 MISSING Low Frequency key (TP53 and KRAS) mutations1 vote 15 comments
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Mutect2 PoN allele-specific or less specific position-based?0 votes 2 comments
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Current Mutect2 somatic variant PoN logic0 votes 3 comments
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GenomicsDBImport throw "no tiledbgenomicsdb in java.library.path" error0 votes 3 comments
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Somatic copy ratio alterations in benign case samples0 votes 4 comments
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Error running GATK CNV PoN workflow0 votes 5 comments
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Mutect2 somatic mutation identification stopped0 votes 1 comment
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Mutect20 votes 1 comment
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variant calling analysis for fanconi anaemia0 votes 1 comment
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HaplotypeCaller get error, but VCF get indexed0 votes 1 comment
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GATK doesn't find the MuTect2 tool?0 votes 7 comments
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GATK4: RNAseq short variant discovery (SNPs + Indels)0 votes 3 comments
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Mutect2 guide for multiple lanes?0 votes 2 comments
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Forced calling of somatic variants reveals variants with label PASS0 votes 1 comment