Somatic
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Terra module mutect2_pon (4.1.7.0) fails for large sample set (547 samples)0 votes 9 comments
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mutect2-PoN creation0 votes 3 comments
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Does the VQSR approach cause any bias in data from isolated populations?0 votes 3 comments
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Issues with Java heap space in CollectAllelicCounts0 votes 12 comments
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Funcotator datasources.v1.7 gencode raise error0 votes 3 comments
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HaplotypeCaller only produces .vcf.idx file not .vcf0 votes 8 comments
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Funcotator errors0 votes 27 comments
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Incorrect alleles reported by Mutect20 votes 1 comment
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Issue with output from CollectAllelicCounts0 votes 1 comment
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How can i remove chr_Un* from somatic cnv plots?0 votes 2 comments
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GenomicsDBImport genomicsdb-workspace-path not recognized0 votes 3 comments
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Mutect2 output - resources?0 votes 4 comments
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error: read goes past end of reference0 votes 5 comments
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Mutect2's support for MNP in GATK 4.1.8.1?0 votes 3 comments
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CrosscheckFingerprints EXIT_CODE_WHEN_MISMATCH doesn't seem to work0 votes 2 comments
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Mutect2 multi-sample pipeline0 votes 13 comments
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Mutect2 for ultrasensitive low coverage calling0 votes 2 comments
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SAMException: Value was put into PairInfoMap error even after using -M flag0 votes 5 comments
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I can't make FastaAlternateReferenceMaker works0 votes 4 comments
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Error using output of ScatterIntervalsByNs by SplitIntervals0 votes 1 comment
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CalculateContamination "there is no such column: contig"1 vote 8 comments