Somatic
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Panel of normals for Mutect2 GRCh370 votes 2 comments
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Error initializing feature reader for path somatic-hg38_1000g_pon.hg38.vcf.gz Answered0 votes 8 comments
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SNP analysis returning way too many variants0 votes 1 comment
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Funcotator does not work on hg190 votes 1 comment
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Mutect2 for ATAC-seq?0 votes 1 comment
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Question GetPileupSummaries, columns all 00 votes 6 comments
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QUAL values not present in Mutect2 VCF0 votes 2 comments
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GetPileupSummaries error0 votes 4 comments
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Do read group names have effect on marking duplicates using GATK?0 votes 1 comment
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GATK Funcotator missing DP and AF information from vcf file0 votes 3 comments
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GATK Funcotator Variant_Classification0 votes 1 comment
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No headers found in VCF0 votes 2 comments
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Some of variants detected by the Mutect2 are contradictory0 votes 3 comments
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af-only-gnomad.hg38.vcf.gz details0 votes 8 comments
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Funcotator to annotate VCF files with structural variants0 votes 2 comments
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Broad hg19 TWIST interval list Answered1 vote 4 comments
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GetPileupSummaries get only header and no output0 votes 1 comment
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No Output from GenomicsDBImport0 votes 2 comments
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is it possible to use a gcs bucket directory as tmp directory?0 votes 3 comments
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[Repost] Wrong annotation with Funcotator 1.7 Answered0 votes 10 comments
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The missing value in Mutect2 vcf0 votes 2 comments
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Empty final PON vcf file from 7 samples Answered0 votes 18 comments
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The missing value in Mutect2 vcf0 votes 2 comments
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How mutect2 panel of normal works? Answered0 votes 8 comments
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"no suitable codecs found" by using CreateSomaticPanelOfNormals0 votes 1 comment
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Mutect2 PON VCF0 votes 3 comments