Somatic
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FilterMutectCalls chokes on infinite POPAF produced by Mutect2 Answered0 votes 10 comments
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Smoothing noisy tumor-only CNV data?0 votes 3 comments
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Allelic fraction NaNs in CNV pipeline0 votes 1 comment
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Funcotator maf output problems on Varscan2 vcf files0 votes 10 comments
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BaseRecalibrator takes forever to run. Any suggestions?0 votes 3 comments
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calling Multi-allelic single nucleotide variants with mutect20 votes 1 comment
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Funcotator error: StringIndexOutOfBoundsException Answered0 votes 6 comments
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CNV pipeline not plotting all segments - PlotModeledSegments0 votes 2 comments
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Mutect2 - Need one or two reads to construct a fragment0 votes 13 comments
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mutect2 calls if one of the samples have low coverage? filtering?0 votes 4 comments
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Segmentation fault when using GenomicsDBImport to create a panel of normals0 votes 8 comments
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Somatic pipeline from FASTQ to VCF0 votes 2 comments
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Call germline mutations from Mutect21 vote 3 comments
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docker CreateReadCountPanelOfNormals cblas_dspr error0 votes 10 comments
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Missing link for TCGA WGS bam files on FireCloud0 votes 1 comment
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GatherVcfs error.0 votes 1 comment
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CollectGcBiasMetrics Array Index Out Of Bounds Exception0 votes 3 comments