Somatic
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Details about the filters used in a previous version of FilterMutectCalls0 votes 7 comments
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Mutect2 overlapping reads behavior with --pcr-snv-qual parameter0 votes 2 comments
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Mutect2 output False Negative SNV result0 votes 6 comments
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Mutect2 -could not detect expected Indels0 votes 2 comments
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SOLVED: Get read counts of Mutect2 somatic variants1 vote 1 comment
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Why are some variants not phased in Mutect20 votes 1 comment
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CalculateContamination error0 votes 1 comment
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how to generate the common site file for hg38 (CNV analysis)0 votes 2 comments
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False positive INDELs by Mutect20 votes 1 comment
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Mutect2 - No .stats file created with SLURM1 vote 2 comments
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Mutect2 with HiFi0 votes 2 comments
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normal sample AF in Mutect2 paired mode0 votes 1 comment
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MUTECT2 bamout reports far more reads than original bam - reliable?0 votes 1 comment
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Somatic copy number variants (CNVs) and Panel of Normals creation0 votes 6 comments
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FilterMutectCalls complains about the --ob-prior file's result0 votes 4 comments
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Somatic CNV Workflow Tutorials0 votes 1 comment
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Mutect2 VCF out Tumor Normal0 votes 5 comments
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GATK 4.3.0.0 Mutect2 fail to call variant Answered0 votes 2 comments
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How to recover a mutation from secondary alignment0 votes 8 comments
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Is it ok to use -L for each chromosome separately when running Mutect2?0 votes 1 comment
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Asking for advice on Mutect2 calling in somatic but amplicon data0 votes 2 comments
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How to call somatic variants without normal matched sample (cfDNA)0 votes 0 comments
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Somatic mutations detection using mutect20 votes 0 comments