Somatic
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GenotypeGVCFs runtime extremely long and not starting at 0%0 votes 1 comment
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Mutect tumor-only vs matched normal calls? Answered0 votes 2 comments
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(MultiSample Mode) Somatic Variants PASSed with zero Normal Coverage0 votes 2 comments
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Mutect2 Funcotator error0 votes 31 comments
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Assignment of Read group for Ion Torrent reads0 votes 1 comment
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AnalyzeCovariates Answered0 votes 9 comments
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Mutect2 PON - gnomAD input?0 votes 18 comments
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Funcotator Appears to have completed but with RunTimeException0 votes 4 comments
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Option "--dont-use-soft-clipped-bases" does not seem to work in Mutect20 votes 13 comments
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Running GATK funcotator on cluster0 votes 10 comments
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sgz used in tumor-only model0 votes 10 comments
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gatk CollectAllelicCounts error1 vote 6 comments
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Mutect2 missing variant0 votes 3 comments
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Functotator - I/O error in the advisory file locking logic0 votes 1 comment
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GenomeSTRiP CNVDiscovery error0 votes 7 comments
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Using VSQR for somatic mutations?0 votes 8 comments
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true somatic mutation not called by mutect20 votes 1 comment
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GATK HaplotypeCaller (v 4.1.7.0)--alleles0 votes 3 comments
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How should I deal with tandem repeat?0 votes 2 comments
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mutect2 realignment0 votes 3 comments
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Increased number of false positives in Mutect2 GATK 4.1.7.00 votes 13 comments
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Command Gatk not found0 votes 4 comments
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Whole genome Pooled sequnce data analysis0 votes 1 comment
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Somatic - Not cancer - RNA0 votes 5 comments
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PoN: Mutect2 error0 votes 7 comments
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SplitIntervals Random or Not?0 votes 2 comments
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Using LearnReadOrientationModel produces new mutations?0 votes 2 comments