Somatic
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Mutect2 output - resources?0 votes 4 comments
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error: read goes past end of reference0 votes 5 comments
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Mutect2's support for MNP in GATK 4.1.8.1?0 votes 3 comments
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CrosscheckFingerprints EXIT_CODE_WHEN_MISMATCH doesn't seem to work0 votes 2 comments
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Mutect2 multi-sample pipeline0 votes 13 comments
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Mutect2 for ultrasensitive low coverage calling0 votes 2 comments
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SAMException: Value was put into PairInfoMap error even after using -M flag0 votes 5 comments
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I can't make FastaAlternateReferenceMaker works0 votes 4 comments
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Error using output of ScatterIntervalsByNs by SplitIntervals0 votes 1 comment
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CalculateContamination "there is no such column: contig"1 vote 8 comments
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Custom made Panel of Normals required?2 votes 2 comments
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Mutect2 false negatives0 votes 1 comment
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Generating ACS like output from new GATK CNV pipeline (WGS)2 votes 4 comments
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Mutect2 --alleles param GATK_4.1.7.00 votes 2 comments
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filtervariant in GATK 3.80 votes 1 comment
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Mutect2 parallelize input0 votes 4 comments
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Mutect2-PON Storage object issue when running across multiple samples?0 votes 30 comments
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has gatk consider Duke regions and CRG36mer0 votes 2 comments
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mutect2 vcf header0 votes 2 comments
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Mutect2 doesn't produce stats file0 votes 17 comments
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GenotypeGVCFs runtime extremely long and not starting at 0%0 votes 1 comment
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Mutect tumor-only vs matched normal calls? Answered0 votes 2 comments
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(MultiSample Mode) Somatic Variants PASSed with zero Normal Coverage0 votes 2 comments