Somatic
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Mutect2 java.lang.NullPointerException Answered0 votes 7 comments
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Creating Panel of Normals Error0 votes 3 comments
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LeftAlignAndTrimVariants removes header tags0 votes 1 comment
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problem with docker image for Copy Number Alterations tutorial0 votes 2 comments
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Funcotator b38 and hg38 contig compatibility issue0 votes 3 comments
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Sample does not have a positive sample median when running DenoiseReadCounts0 votes 2 comments
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GetPileupSummaries errors0 votes 1 comment
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VariantAnnotator QualByDepth - no error and no annotation..0 votes 10 comments
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GenomeSTRiP analysis0 votes 3 comments
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Mutect errors0 votes 8 comments
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GenomicsDBImport job does not complete, but gives no error0 votes 3 comments
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BedToIntervalList Error0 votes 2 comments
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Can I run VQSR filter with individual chromosomes ?0 votes 4 comments
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Terra module mutect2_pon (4.1.7.0) fails for large sample set (547 samples)0 votes 9 comments
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mutect2-PoN creation0 votes 3 comments
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Does the VQSR approach cause any bias in data from isolated populations?0 votes 3 comments
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Issues with Java heap space in CollectAllelicCounts0 votes 12 comments
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GenomicsDBImport error: USER ERROR has occurred: Duplicate sample: 1. Sample was found in both file: Completed0 votes 11 comments
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Funcotator datasources.v1.7 gencode raise error0 votes 3 comments
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HaplotypeCaller only produces .vcf.idx file not .vcf0 votes 8 comments
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Funcotator errors0 votes 27 comments
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Incorrect alleles reported by Mutect20 votes 1 comment
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Issue with output from CollectAllelicCounts0 votes 1 comment
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How can i remove chr_Un* from somatic cnv plots?0 votes 2 comments
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GenomicsDBImport genomicsdb-workspace-path not recognized0 votes 3 comments