Somatic
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Missing mutations0 votes 7 comments
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strand bias and orientation bias4 votes 1 comment
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DepthOfCoverage intervals0 votes 1 comment
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how to see 2 or more variants are in the same read0 votes 1 comment
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CalculateContamination: Multiple KernelSegmenter warnings0 votes 17 comments
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GenomicsDBImport: are all intervals being processed or is there an error? Answered0 votes 4 comments
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Mutect2 panel of normals and germline source files with incompatible contigs0 votes 5 comments
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How do I get known-SNP, Indel files in hg19 version?0 votes 2 comments
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bwa index doesn't create .alt file in hg38 Answered1 vote 8 comments
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FilterMutectCalls0 votes 5 comments
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Which gnomAD version is used for somatic-hg38_af-only-gnomad.hg38.vcf.gz0 votes 2 comments
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Running Mutect wdl on Cromwell0 votes 3 comments
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Mutect2 clustered_events filtered0 votes 1 comment
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Using CollectOxoGMetrics to determine biological 8oxoG0 votes 1 comment
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VariantAnnotator returns NullPointerException0 votes 6 comments
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Germline false positives in Mutect20 votes 9 comments
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Error in FilterMutectCalls0 votes 4 comments
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Memory error with Mutect20 votes 1 comment
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Error while running CreateReadCountPanelOfNormals0 votes 1 comment
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MarkDuplicatesSpark error missing Read Group fields1 vote 1 comment
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Missed Somatic CNV call with significant log2 values0 votes 9 comments
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MuTect2: There are too many keys for the sample0 votes 3 comments
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How do I get MuTect2 to output the contig lines in the VCF header?0 votes 2 comments
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Missing contig lines in thh Somatic b37 gnomad sites-only VCF header0 votes 2 comments
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A USER ERROR has occurred: af-only-gnomad.hg38.vcf.gz because no suitable codecs found Answered0 votes 9 comments