Somatic
Show all
Sort by newest post
-
Empty final PON vcf file from 7 samples0 votes 16 comments
-
The missing value in Mutect2 vcf0 votes 2 comments
-
How mutect2 panel of normal works? Answered0 votes 8 comments
-
"no suitable codecs found" by using CreateSomaticPanelOfNormals0 votes 1 comment
-
Mutect2 PON VCF0 votes 3 comments
-
Bamout haplotypes are much worse than bamout tumor reads would suggest0 votes 1 comment
-
Wrong annotation with Funcotator 1.70 votes 3 comments
-
Empty final PON vcf file from 7 samples0 votes 2 comments
-
How to use UpdateVCFSequenceDictionary if I don't have any input VCF files?0 votes 9 comments
-
GATK4 MUTECT2 missed some variants in the raw vcf0 votes 2 comments
-
How do I add allele depth to Mutect2 output?0 votes 2 comments
-
Mutect2 strand_bias problem0 votes 2 comments
-
Sequence dictionary and index contain different numbers of contigs0 votes 4 comments
-
Is BQSR accurate on Novaseq 6000?0 votes 3 comments
-
Cromwell: can't find file ID0 votes 1 comment
-
Missing mutations0 votes 7 comments
-
strand bias and orientation bias4 votes 1 comment
-
DepthOfCoverage intervals0 votes 1 comment
-
how to see 2 or more variants are in the same read0 votes 1 comment
-
CalculateContamination: Multiple KernelSegmenter warnings0 votes 17 comments
-
GenomicsDBImport: are all intervals being processed or is there an error? Answered0 votes 4 comments
-
Mutect2 panel of normals and germline source files with incompatible contigs0 votes 5 comments
-
How do I get known-SNP, Indel files in hg19 version?0 votes 2 comments
-
bwa index doesn't create .alt file in hg38 Answered1 vote 8 comments
-
FilterMutectCalls0 votes 5 comments
-
Which gnomAD version is used for somatic-hg38_af-only-gnomad.hg38.vcf.gz0 votes 2 comments
-
Running Mutect wdl on Cromwell0 votes 3 comments