Somatic
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Do read group names have effect on marking duplicates using GATK?0 votes 1 comment
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GATK Funcotator missing DP and AF information from vcf file0 votes 3 comments
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GATK Funcotator Variant_Classification0 votes 1 comment
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No headers found in VCF0 votes 2 comments
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Some of variants detected by the Mutect2 are contradictory0 votes 3 comments
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af-only-gnomad.hg38.vcf.gz details0 votes 8 comments
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Funcotator to annotate VCF files with structural variants0 votes 2 comments
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Broad hg19 TWIST interval list Answered1 vote 4 comments
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GetPileupSummaries get only header and no output0 votes 1 comment
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No Output from GenomicsDBImport0 votes 2 comments
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is it possible to use a gcs bucket directory as tmp directory?0 votes 3 comments
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[Repost] Wrong annotation with Funcotator 1.7 Answered0 votes 10 comments
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The missing value in Mutect2 vcf0 votes 2 comments
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Empty final PON vcf file from 7 samples Answered0 votes 18 comments
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The missing value in Mutect2 vcf0 votes 2 comments
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How mutect2 panel of normal works? Answered0 votes 8 comments
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"no suitable codecs found" by using CreateSomaticPanelOfNormals0 votes 1 comment
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Mutect2 PON VCF0 votes 3 comments
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Bamout haplotypes are much worse than bamout tumor reads would suggest0 votes 1 comment
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Wrong annotation with Funcotator 1.70 votes 3 comments
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Empty final PON vcf file from 7 samples0 votes 2 comments
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How to use UpdateVCFSequenceDictionary if I don't have any input VCF files?0 votes 9 comments
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GATK4 MUTECT2 missed some variants in the raw vcf0 votes 2 comments
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How do I add allele depth to Mutect2 output?0 votes 2 comments
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Mutect2 strand_bias problem0 votes 2 comments
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Sequence dictionary and index contain different numbers of contigs0 votes 4 comments
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Is BQSR accurate on Novaseq 6000?0 votes 3 comments
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Cromwell: can't find file ID0 votes 1 comment