Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

ApplyVQSR output restriction


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    Anthony DiCi

    Hi Lindo Nkambule,

    Thank you so much for sharing your issue and progressive updates! I will most certainly communicate your feature suggestion on choosing strictness with regards to position to the development team.

    We greatly appreciate you taking the time to post your workarounds and solutions to the GATK forum. Hopefully, this will help others encountering similar issues in the future.


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