Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

CombineGVCFs - A USER ERROR has occurred: Bad input: Raw value for annotation has 1 values, expected 2

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    Genevieve Brandt (she/her)

    Hi David Medina,

    Do you know how these VCFs were created? It looks like there is an issue in your RMSMappingQuality annotation. 

    Best,

    Genevieve

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    Genevieve Brandt (she/her)

    Hi David,

    We haven't heard from you in a while so we're going to close out this ticket in our system. If you still require assistance, simply respond to this thread and we'll be happy to pick up where we left off!

    Kind regards,

    Genevieve​

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