I wanted to get merged.vcf file but I didn't get any output file after I ran GenotypeGVCFs.
I use GATK version used: gatk-4.2.0.0.
Samples are 35 human short-read WGS data.

I made the GenomicDB from these commands:

 $gatk VcfToIntervalList 
 I=bwa_bam/gvcf/sample1_markdup.addRG.g.vcf 
 O=sample.interval_list

$gatk GenomicsDBImport \
  --genomicsdb-workspace-path bwa_bam/GenomicDB \
  --intervals bwa_bam/sample.interval_list \
   --sample-name-map bwa_bam/gvcf_sample_name.txt

After that, I ran this command and got this log:

$gatk GenotypeGVCFs \
> -R bwa_index/hs38DH.fa \
> -V gendb://GenomicDB \
> -O mergedVCF/merged.vcf 

c) Entire program log:12:02:24.354 INFO GenotypeGVCFs - ------------------------------------------------------------
12:02:24.354 INFO GenotypeGVCFs - The Genome Analysis Toolkit (GATK) v4.2.0.0
12:02:24.355 INFO GenotypeGVCFs - For support and documentation go to https://software.broadinstitute.org/gatk/
12:02:24.355 INFO GenotypeGVCFs - Executing as hashimoto@gpu02 on Linux v3.10.0-1062.9.1.el7.x86_64 amd64
12:02:24.355 INFO GenotypeGVCFs - Java runtime: OpenJDK 64-Bit Server VM v1.8.0_252-b09
12:02:24.355 INFO GenotypeGVCFs - Start Date/Time: 2022/08/17 12:02:23 JST
12:02:24.355 INFO GenotypeGVCFs - ------------------------------------------------------------
12:02:24.355 INFO GenotypeGVCFs - ------------------------------------------------------------
12:02:24.356 INFO GenotypeGVCFs - HTSJDK Version: 2.24.0
12:02:24.356 INFO GenotypeGVCFs - Picard Version: 2.25.0
12:02:24.356 INFO GenotypeGVCFs - Built for Spark Version: 2.4.5
12:02:24.356 INFO GenotypeGVCFs - HTSJDK Defaults.COMPRESSION_LEVEL : 2
12:02:24.356 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_READ_FOR_SAMTOOLS : false
12:02:24.356 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_SAMTOOLS : true
12:02:24.356 INFO GenotypeGVCFs - HTSJDK Defaults.USE_ASYNC_IO_WRITE_FOR_TRIBBLE : false
12:02:24.356 INFO GenotypeGVCFs - Deflater: IntelDeflater
12:02:24.356 INFO GenotypeGVCFs - Inflater: IntelInflater
12:02:24.356 INFO GenotypeGVCFs - GCS max retries/reopens: 20
12:02:24.356 INFO GenotypeGVCFs - Requester pays: disabled
12:02:24.356 INFO GenotypeGVCFs - Initializing engine
12:02:25.562 INFO GenomicsDBLibLoader - GenomicsDB native library version : 1.3.2-e18fa63
12:02:25.564 INFO GenotypeGVCFs - Shutting down engine
[2022/08/17 12:02:25 JST] org.broadinstitute.hellbender.tools.walkers.GenotypeGVCFs done. Elapsed time: 0.03 minutes.
Runtime.totalMemory()=1106247680
java.lang.IllegalStateException: There is no genome data stored in the database
at org.genomicsdb.reader.GenomicsDBFeatureReader.<init>(GenomicsDBFeatureReader.java:84)
at org.broadinstitute.hellbender.engine.FeatureDataSource.getGenomicsDBFeatureReader(FeatureDataSource.java:409)
at org.broadinstitute.hellbender.engine.FeatureDataSource.getFeatureReader(FeatureDataSource.java:328)
at org.broadinstitute.hellbender.engine.FeatureDataSource.<init>(FeatureDataSource.java:284)
at org.broadinstitute.hellbender.engine.VariantLocusWalker.initializeDrivingVariants(VariantLocusWalker.java:76)
at org.broadinstitute.hellbender.engine.VariantWalkerBase.initializeFeatures(VariantWalkerBase.java:67)
at org.broadinstitute.hellbender.engine.GATKTool.onStartup(GATKTool.java:707)
at org.broadinstitute.hellbender.engine.VariantLocusWalker.onStartup(VariantLocusWalker.java:63)
at org.broadinstitute.hellbender.cmdline.CommandLineProgram.runTool(CommandLineProgram.java:138)
at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMainPostParseArgs(CommandLineProgram.java:192)
at org.broadinstitute.hellbender.cmdline.CommandLineProgram.instanceMain(CommandLineProgram.java:211)
at org.broadinstitute.hellbender.Main.runCommandLineProgram(Main.java:160)
at org.broadinstitute.hellbender.Main.mainEntry(Main.java:203)
at org.broadinstitute.hellbender.Main.main(Main.java:289)

-----------------------------

Do you have any ideas to solve this problem?
Which file is not correct?

Sincerely,