Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

should I worry if the tmp folder not empty after completing GenotypeGVCFs


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    Genevieve Brandt (she/her)

    Hi Jue Jiang,

    Could you post the program log from your two genotyping runs? Looking at the program log is the most helpful for troubleshooting.



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