Genome Analysis Toolkit

Variant Discovery in High-Throughput Sequencing Data

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Developed in the Data Sciences Platform at the Broad Institute, the toolkit offers a wide variety of tools with a primary focus on variant discovery and genotyping. Its powerful processing engine and high-performance computing features make it capable of taking on projects of any size. Learn more

EXON19 FS EGFR variant

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    Anthony DiCi

    Thank you for your post, linouhao ! I want to let you know we have received your question and will be moving it to the Community Discussions -> General Discussion topic, as the Somatic topic is for reporting bugs and issues with GATK.

    You may be able to find more helpful information on the VarDict GitHub.

    We'll get back to you if we have any updates or follow up questions. Please see our Support Policy for more details about how we prioritize responding to questions.

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    linouhao

    thanks a lot

    sorry, I forgot to revise vardict as gatk, because I used both callers, they all found that

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    Anthony DiCi

    Hi linouhao,

    I'm glad to hear that our documentation was able to help!

    I will be closing this ticket now. Please do not hesitate to reply with any questions/issues that may arise in the future.

    Thank you for being a valued member of our GATK community!

    Best,

    Anthony

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